View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13441_high_9 (Length: 556)
Name: NF13441_high_9
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 43534643 - 43534115
Alignment:
| Q |
18 |
aataagtttacatggaatggttagattatgatgttcgtgcgagtattggtgatttgaatgttgattcagattcagaacatatattatgtttcaagtttgc |
117 |
Q |
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| T |
43534643 |
aataagtttacatggaatggttagattatgatgttcgtgcgagtattggcaatttgaatgttgattcagtttcagaacatatattatgtttcaagtttgc |
43534544 |
T |
|
| Q |
118 |
tgtgcatcatagatttttgttcattgtatttcatagtgcactaatttgatacaatattgatttttcatacatactaatcggttaattcttaattcatgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
43534543 |
tgtgcatcatagatttttgttcattgtatttcttagtgcactaatttgatacaatattgatttt-catacatactaatcggttaattcttagttcatgtt |
43534445 |
T |
|
| Q |
218 |
gttgaagcatattaattgctggcttagttatttactcataacagtctcatagctgtagctatttgttgtcttgagaactgttattgcaagtctcaaaact |
317 |
Q |
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| T |
43534444 |
gttgaagcatattaattgctggcttagttatttactgataacagtctcatagctgtagctatttgttgtcttgagaactgttattgcaagtctcaaaact |
43534345 |
T |
|
| Q |
318 |
caaatactcactggatagaatcatgtggatttatggctatacccctttaatagatttgacatcaaatgtcaactagactttctgttatgaacttatgatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43534344 |
caaatactcactggatagaatcatgtggatttatggctatacccctttaatagatttgacatcaaatgtcaactagactttctgttatgaacttatgatg |
43534245 |
T |
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| Q |
418 |
catctcttagtaatgataaatcctcatgttttcaggtttcatattattttagaaagccgtgtgcaaatgatatcgtgatatttaaaagccctccagtcct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43534244 |
catctcttagtaatgataaatcctcatgttttcaggtttcatattattttagaaagccgtgtgcaaatgatatcgtgatatttaaaagccctccagtcct |
43534145 |
T |
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| Q |
518 |
tcaagaagttgggtacactgatgatgatgt |
547 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43534144 |
tcaagaagttgggtacactgatgatgatgt |
43534115 |
T |
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