View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13441_low_13 (Length: 444)
Name: NF13441_low_13
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 35200265 - 35200685
Alignment:
| Q |
18 |
catatattgtagcagtcaatattacaaacaaatccaccatcatattaacaatttatggacatgnnnnnnnnnnnattttatcttattttgtaatatagat |
117 |
Q |
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| T |
35200265 |
catatattgtagcagtcaatattacaaacaaatccaccatcatattaacaatttttggacatgttattt------ttttatcttattttgtaatatagat |
35200358 |
T |
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| Q |
118 |
tcatgctttataatgaatgtacaagcttacatatatatatt----aactgatcaaatcaaaagtgtagtagatgtaatattttagttaactaataccaag |
213 |
Q |
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| T |
35200359 |
tcatgctttataatgaatgtacaaccttacatatatatatatatcaactgatcaaatcaaaagtgtagtagatgtaatattttagttaactaataccaag |
35200458 |
T |
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| Q |
214 |
gtttatatgacagagaattaaactggtggagaataatgatgggaagtagggaaggagaagaaaatcccttggaggactacaaaatctgtttatccaccca |
313 |
Q |
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| T |
35200459 |
gtttatatgacagagaattaaactggtggagaataatgatgggaagtagggaaggagaagaaaatcccttggaggactacaaaatctgtttatccaccca |
35200558 |
T |
|
| Q |
314 |
tatcttctgtgttttgctttatctttctttaattattgttacttttttgcttaaaagcttagctgcttaccacatggttatgtacatcaaggttccattc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35200559 |
tatcttctgtgttttgctttatctttctttaattattgttacttttttgcttaaaagcttagctgcttaccacatggttatgtacatcaaggttccattc |
35200658 |
T |
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| Q |
414 |
catgccaccatctcatggctgatctct |
440 |
Q |
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| T |
35200659 |
catgccaccatctcatggctgatctct |
35200685 |
T |
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