View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13441_low_14 (Length: 411)
Name: NF13441_low_14
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 22 - 392
Target Start/End: Original strand, 43413495 - 43413870
Alignment:
| Q |
22 |
tattgatgaacaaa-taatttatgaatattttaaattcatattattgttatttaaagnnnnnnnggaacnnnnnnnngtacaataatattctttatg--- |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
43413495 |
tattgatgaacaaaataatttatgaatattttaaattcatattattgttatttaaagaaaaaaaggaacttttttttgtacaataatattctttattata |
43413594 |
T |
|
| Q |
118 |
catgagtcttaggagtgtcaaagctatgttgaagcaataaaacgaaatttctgtttttactaatacttttatgagtaacctcacacgtgttctaagagtg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
43413595 |
catgagtcttaggagtgtcaaagctatgttgaaataataaaacgaaatttctgtttttactaatacttttatgagtaacctcacaagtgatctaagagtg |
43413694 |
T |
|
| Q |
218 |
tcctacgggtatcaaacaccgtcgcatgtccgatacagagacacatttgatttgaagagtgtcagtgcttcatagtcca-tttctctatcagagctccac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
43413695 |
tcctacgggtatcaaacaccgtcgcatgtccgataacgagacacacttgatttgaagagtgttcgtgcttcatagtccattttttctatcagagctccac |
43413794 |
T |
|
| Q |
317 |
cttactttatcacgaccttcctctggtcgctgctgtcataggcttacctgccgctactgtgggacacgggatttcc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43413795 |
cttactttatcacgaccttcctctggtcgctgctgtcataggcttacctgccgctactgtgggacatgggatttcc |
43413870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University