View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13441_low_15 (Length: 381)
Name: NF13441_low_15
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 48963391 - 48963660
Alignment:
| Q |
20 |
catatacattgtgtgacagaggcagcagctagcagcaaatggcttcatcaaatgcgaaaacatttaggtttgatgagatcgcaaaacacaacaacaaaac |
119 |
Q |
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| T |
48963391 |
catatacattgtgtgacagaggcagcagctagcagcaaatggcttcatcaaatgcgaaaacatttaggtttgatgagatcgcaaaacacaacaacaaaac |
48963490 |
T |
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| Q |
120 |
tgattgctggattattatcaatggaaaggtccttctctctctcnnnnnnnnnnnnnnnnnnatcattttattctcttactatatgttttttcaattgcat |
219 |
Q |
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| T |
48963491 |
tgattgctggattattatcaatggaaaggtccttctctctct----------tttttttttatcattttattctcttactatatgttttttcaattgcat |
48963580 |
T |
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| Q |
220 |
gtctacgtttttatgatattgaaatttagacataataataattgacattgaatcacttgttgctaacagatttattgaaa |
299 |
Q |
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| T |
48963581 |
gtctacatttttatgatattgaaatttagacataataataattgacattgaatcacttgttgctaacagatttattgaaa |
48963660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 48963713 - 48963754
Alignment:
| Q |
299 |
aatgaatatgtgtgagacttgttgcatcattgtaaatttgta |
340 |
Q |
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| T |
48963713 |
aatgaatatgtgtgagacttgttgcatcattgtaaatttgta |
48963754 |
T |
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