View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13441_low_19 (Length: 334)

Name: NF13441_low_19
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13441_low_19
NF13441_low_19
[»] chr7 (10 HSPs)
chr7 (191-334)||(15121318-15121461)
chr7 (17-114)||(5892978-5893076)
chr7 (201-334)||(47589146-47589279)
chr7 (191-282)||(26199886-26199980)
chr7 (200-270)||(36934343-36934413)
chr7 (210-282)||(5892812-5892884)
chr7 (17-114)||(26199711-26199809)
chr7 (15-114)||(36934168-36934268)
chr7 (26-102)||(40074342-40074419)
chr7 (17-114)||(15121538-15121634)
[»] chr3 (9 HSPs)
chr3 (191-334)||(51056642-51056785)
chr3 (194-281)||(25498946-25499033)
chr3 (17-114)||(25498767-25498865)
chr3 (256-334)||(38258950-38259028)
chr3 (26-110)||(38258762-38258847)
chr3 (26-114)||(49358515-49358604)
chr3 (202-259)||(49358685-49358743)
chr3 (287-334)||(51485079-51485126)
chr3 (37-70)||(17113764-17113797)
[»] chr4 (16 HSPs)
chr4 (202-334)||(50589695-50589827)
chr4 (191-334)||(14792338-14792481)
chr4 (191-282)||(12888347-12888438)
chr4 (194-334)||(51407142-51407283)
chr4 (17-114)||(12888172-12888270)
chr4 (17-105)||(23533284-23533373)
chr4 (21-114)||(50589512-50589606)
chr4 (194-269)||(18357200-18357274)
chr4 (194-269)||(18431533-18431607)
chr4 (17-114)||(14792163-14792261)
chr4 (32-114)||(18357037-18357120)
chr4 (32-114)||(18431687-18431770)
chr4 (17-114)||(51407363-51407459)
chr4 (26-106)||(3915253-3915334)
chr4 (17-65)||(8817560-8817608)
chr4 (49-110)||(3926263-3926325)
[»] chr1 (10 HSPs)
chr1 (206-334)||(36057663-36057791)
chr1 (206-334)||(36058791-36058919)
chr1 (201-282)||(32946801-32946882)
chr1 (232-334)||(27109901-27110003)
chr1 (17-114)||(27109777-27109875)
chr1 (202-334)||(15115470-15115603)
chr1 (202-334)||(15139986-15140119)
chr1 (209-334)||(15123680-15123806)
chr1 (209-334)||(15147868-15147994)
chr1 (80-114)||(32946969-32947003)
[»] scaffold0005 (2 HSPs)
scaffold0005 (191-334)||(47250-47393)
scaffold0005 (17-114)||(47470-47568)
[»] chr5 (7 HSPs)
chr5 (191-334)||(33758270-33758414)
chr5 (191-334)||(9436521-9436664)
chr5 (191-282)||(27632084-27632175)
chr5 (190-280)||(36607762-36607852)
chr5 (26-114)||(9436355-9436444)
chr5 (15-114)||(33758095-33758193)
chr5 (17-56)||(36607987-36608026)
[»] chr8 (6 HSPs)
chr8 (191-282)||(20519119-20519210)
chr8 (191-280)||(38149387-38149476)
chr8 (191-280)||(32919386-32919476)
chr8 (29-114)||(38149553-38149639)
chr8 (29-114)||(32919543-32919630)
chr8 (49-114)||(20518976-20519042)
[»] chr6 (5 HSPs)
chr6 (191-282)||(22696648-22696739)
chr6 (191-282)||(34502877-34502968)
chr6 (17-114)||(22696473-22696571)
chr6 (26-114)||(34503045-34503134)
chr6 (202-274)||(13032436-13032507)
[»] chr2 (4 HSPs)
chr2 (191-287)||(5051490-5051586)
chr2 (191-280)||(36593006-36593095)
chr2 (17-114)||(36592831-36592929)
chr2 (37-114)||(5051335-5051413)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 191 - 334
Target Start/End: Complemental strand, 15121461 - 15121318
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 290  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  15121461 atctggatcggaaggaaacatccaccacacaaaagcaccagacaacctatgtttttctaagagccgcaaactcagcacccgcaaggaagaaaccaacacc 15121362  T
Q  291 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 334  Q
    | ||||  ||| ||| |||||||||||| | |||||||||||||    
T  15121361 gccgcaactaccgtatcaaaaccaccaccaacacctcctcttac 15121318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 5893076 - 5892978
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||  |||||||||||||||||||||||||||||||||||    
T  5893076 tcacaacaacaacaccatcaatccacatcgacaaaccaccagataacagagtaatcgaaccggatgagaaggttctgattgaacccaaccgttgaagac 5892978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 201 - 334
Target Start/End: Original strand, 47589146 - 47589279
Alignment:
Q  201 gaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagtta 300  Q
    |||||||||  ||||||||||||||||||| ||||||||||| ||||||| || ||||||||||  |||||| ||||||||| || ||||| ||||  ||    
T  47589146 gaaggaaacgtccaccacacaaaaacaccaaacaacctgtgtttttctaaaagtcgcaaactcaatacccacgaggaagaaaacagcaccgccgcaacta 47589245  T
Q  301 cagtaccaaaaccaccactatcacctcctcttac 334  Q
    |||||||||||||||||| |||||||| ||||||    
T  47589246 cagtaccaaaaccaccaccatcacctcttcttac 47589279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 26199886 - 26199980
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaac---ctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||   ||||||||||    
T  26199886 atctggatcggaaggaaacaaccaccacacaaaaacaccagacaaccaactgtgtttttctaacagccgcaaactcagcaccaggaaggaagaaa 26199980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 36934343 - 36934413
Alignment:
Q  200 ggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcaccc 270  Q
    ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  36934343 ggaaggaaacatccaccacacaaaaacaccagacaaactgtgtttttctaacagccgcaaactcagcaccc 36934413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 5892884 - 5892812
Alignment:
Q  210 aaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 282  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||    
T  5892884 aaccaccacacaaaaacaccagacaacctgtgtttttctaatagccgcaaactcagcatccgcaaggaagaaa 5892812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 26199711 - 26199809
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| |||||||| | |||   ||||||||| ||||| |||||||||| ||||||||    
T  26199711 tcacaacaacaacaccatcgatacacatcgacaaaccaccaaataatagagtagtcgaacctgatgagaaggtactgatcgaacccaaccattgaagac 26199809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 36934168 - 36934268
Alignment:
Q  15 catcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccgttgaaga 113  Q
    ||||||| || ||||| ||||||||||||  | |||||||||| |||| |||||||| || | || ||||||||||||||| ||||||||||||||||||    
T  36934168 catcacagcagcaacatcatcaatccacactggcaaaccaccagataatagagtagtcgaaccagatgagaaggttctgatcgaacccaaccgttgaaga 36934267  T
Q  114 c 114  Q
    |    
T  36934268 c 36934268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 40074419 - 40074342
Alignment:
Q  26 caacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaaccca 102  Q
    |||||||||| |||||| |||||||||||||| |||||| |||||| | ||||  ||||||||||||||| |||||||    
T  40074419 caacaccatcgatccacctcgacaaaccaccagataacatagtagtcgaaccggatgagaaggttctgatcgaaccca 40074342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 15121634 - 15121538
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||| || |||||||||| | |||||  |||| |||| |||||||||||||||| || | || ||||||||||||||| ||| |||||||||||||||    
T  15121634 tcacagcagcaacaccatcga-ccacactgacataccaacaaataacagagtagtcgaaccagatgagaaggttctgatcgaa-ccaaccgttgaagac 15121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 191 - 334
Target Start/End: Complemental strand, 51056785 - 51056642
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 290  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||   |||||||||| ||||||     
T  51056785 atctggatcagaaggaaacaaccaccatacaaaaacaccagacaacctgtgttgttctaacaaccgcaaactcagcacctgtaaggaagaaaacaacact 51056686  T
Q  291 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 334  Q
    ||||||| |||| ||||||||| ||||| |||||||||||||||    
T  51056685 gtcgcagctacaataccaaaacgaccaccatcacctcctcttac 51056642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 25498946 - 25499033
Alignment:
Q  194 tggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaa 281  Q
    ||||| ||||||||||||||||||| || |||||||||| ||| ||||| ||||||||||||||||||||| || || ||||||||||    
T  25498946 tggatcggaaggaaacaaccaccacgcataaacaccagataacttgtgtttttctaacagccgcaaactcaacatccgcaaggaagaa 25499033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 25498767 - 25498865
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||||||| ||||| |||||||||||||||||||||||| | |||| |||||||| | ||||  ||| ||||||||||| ||| |||||||||||||||    
T  25498767 tcacaacagcaacatcatcaatccacatcgacaaaccactagataatagagtagtcgaaccggatgaaaaggttctgatcgaaaccaaccgttgaagac 25498865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 38258950 - 38259028
Alignment:
Q  256 gcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttacagtaccaaaaccaccactatcacctcctcttac 334  Q
    |||||||||| |||| ||||||||||| |||||||  ||||| || ||||||||||||||||| |||||||||||||||    
T  38258950 gcaaactcagtacccgcaaggaagaaaacaacaccaccgcagctaaagtaccaaaaccaccacaatcacctcctcttac 38259028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 38258762 - 38258847
Alignment:
Q  26 caacaccatcaatccacatcgacaaaccaccaaataacagagtagttga-ccgagtgagaaggttctgattgaacccaaccgttga 110  Q
    |||||||||| | |||||| |||||||||||| |||| || ||||| || |||  ||||||||||||||| |||||||||||||||    
T  38258762 caacaccatcgacccacatagacaaaccaccagataatagggtagtcgaaccggatgagaaggttctgatcgaacccaaccgttga 38258847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 49358515 - 49358604
Alignment:
Q  26 caacaccatcaatccacatcgacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||| ||   ||  |||||||||||||| |||||||||  ||||||||    
T  49358515 caacaccatcaatccatatcgacaatccaccagataacagagtagtcgaatcagacgagaaggttctgatcgaacccaactattgaagac 49358604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 49358685 - 49358743
Alignment:
Q  202 aaggaaacaaccaccacacaaaaacaccagacaacctgtg-tatttctaacagccgcaa 259  Q
    ||||||||||||||||||||||||||| ||||||| |||| | ||||||||| ||||||    
T  49358685 aaggaaacaaccaccacacaaaaacactagacaacttgtgctttttctaacacccgcaa 49358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 51485079 - 51485126
Alignment:
Q  287 caccgtcgcagttacagtaccaaaaccaccactatcacctcctcttac 334  Q
    ||||| ||||| |||| ||||||||||||||| |||||||||||||||    
T  51485079 caccgccgcagctacaataccaaaaccaccaccatcacctcctcttac 51485126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 17113797 - 17113764
Alignment:
Q  37 atccacatcgacaaaccaccaaataacagagtag 70  Q
    ||||||||||||||||||||| ||||||||||||    
T  17113797 atccacatcgacaaaccaccagataacagagtag 17113764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 202 - 334
Target Start/End: Original strand, 50589695 - 50589827
Alignment:
Q  202 aaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttac 301  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||  || |||||||| ||||| |||||||  |||    
T  50589695 aaggaaacaaccaccacacataaacaccaaacaacatgtgtatttctaacagtcgcaaactcagcacctgcatggaagaaaacaacatcgtcgcaactac 50589794  T
Q  302 agtaccaaaaccaccactatcacctcctcttac 334  Q
    |||||| |||||||||| |||||||||||||||    
T  50589795 agtacctaaaccaccaccatcacctcctcttac 50589827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 191 - 334
Target Start/End: Original strand, 14792338 - 14792481
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 290  Q
    ||||||||  |||||||||||||||||||| ||  |||||| |||||||||| |||||||||| |||||||||||||||| ||||||||||| || || |    
T  14792338 atctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgtttttctaacagtcgcaaactcagcacccgcaaggaagaaaacatcatc 14792437  T
Q  291 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 334  Q
    | ||| | |||||||||||||||||||| ||||| |||||||||    
T  14792438 gccgcggctacagtaccaaaaccaccaccatcacatcctcttac 14792481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 12888347 - 12888438
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 282  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||    
T  12888347 atctggatcagaaggaaacaaccaccgcacaaaaacaccagacaacctgtgttttactaacagccgcaaactcagcacccgcaaggaagaaa 12888438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 194 - 334
Target Start/End: Complemental strand, 51407283 - 51407142
Alignment:
Q  194 tggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtc 293  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| || | ||       
T  51407283 tggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcacccacaagaaagaaaacagccccact 51407184  T
Q  294 gcagtta-cagtaccaaaaccaccactatcacctcctcttac 334  Q
    |||  || |||||||||||| ||||  |||||||||||||||    
T  51407183 gcaactagcagtaccaaaactaccatcatcacctcctcttac 51407142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 12888172 - 12888270
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| | | ||  |||||||| |||||| |||||||||||||||||||    
T  12888172 tcacaacagcaacaccatcgatccacatcgacaaaccaccagataacagagtagtcgaatcggatgagaaggatctgatcgaacccaaccgttgaagac 12888270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 23533284 - 23533373
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaacc 105  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||| |||| ||| ||||||    
T  23533284 tcacaacagcaacaccatcaatccacatcgacaaaccaccagataacagagtacttgaaccgggtgagaaggttatgatcgaatccaacc 23533373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 50589512 - 50589606
Alignment:
Q  21 aacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||| ||| | |||| ||| ||||||| |||| |||||||||| | ||||||    
T  50589512 aacaacaacaccatcaatccacatcgacaaactaccagataacagagcagtcgaaccgggtgggaaggttttgatcgaacccaaccatcgaagac 50589606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 18357200 - 18357274
Alignment:
Q  194 tggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacc 269  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||| | || |||||||| ||||||||||||||    
T  18357200 tggatcggaaggaaa-aaccatcacacaaaaacaccagacaacctgtattttcctaacagctgcaaactcagcacc 18357274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 18431607 - 18431533
Alignment:
Q  194 tggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacc 269  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||| | || |||||||| ||||||||||||||    
T  18431607 tggatcggaaggaaa-aaccatcacacaaaaacaccagacaacctgtattttcctaacagctgcaaactcagcacc 18431533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 14792163 - 14792261
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||| || |||||||||| |||||||||||||| |||||| ||||||||||||| | ||||  |||||  ||| |||| |||||||||||||||||||    
T  14792163 tcacagcagcaacaccatcgatccacatcgacaacccaccagataacagagtagtcgaaccggatgagatagttatgatcgaacccaaccgttgaagac 14792261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 18357037 - 18357120
Alignment:
Q  32 catcaatccacatcgacaaaccaccaaataacagagtagttga-ccgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||| ||||||||||||||| ||| | ||||||||||||| || |||  ||||||| ||||||| |||||||||||||||||||    
T  18357037 catcgatccacatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccgttgaagac 18357120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 18431770 - 18431687
Alignment:
Q  32 catcaatccacatcgacaaaccaccaaataacagagtagttga-ccgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||| ||||||||||||||| ||| | ||||||||||||| || |||  ||||||| ||||||| |||||||||||||||||||    
T  18431770 catcgatccacatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccgttgaagac 18431687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 51407459 - 51407363
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||||||| |||||||||| |||||| ||||||||||| || |||||||  ||||  | |  | ||||||||||||||| |||||||||||||||||||    
T  51407459 tcacaacagcaacaccatcgatccacttcgacaaaccatcagataacag--tagtccaactggatgagaaggttctgatcgaacccaaccgttgaagac 51407363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 3915253 - 3915334
Alignment:
Q  26 caacaccatcaatccacatcgacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccg 106  Q
    |||||||||| |||||| |||| ||||||||| |||||||| |||| || | || |||||||||||| || |||||||||||    
T  3915253 caacaccatcgatccacgtcgataaaccaccagataacagaatagtcgaaccagatgagaaggttctaatcgaacccaaccg 3915334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 8817560 - 8817608
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacag 65  Q
    |||||||| |||||||||| ||||||||||||||||||| | |||||||    
T  8817560 tcacaacagcaacaccatcgatccacatcgacaaaccactagataacag 8817608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 3926263 - 3926325
Alignment:
Q  49 aaaccaccaaataacagagtagttga-ccgagtgagaaggttctgattgaacccaaccgttga 110  Q
    ||||||||| ||||||||||||| || |||  ||||||||||||||| |||||||||| ||||    
T  3926263 aaaccaccagataacagagtagtcgaaccggatgagaaggttctgatcgaacccaaccattga 3926325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 206 - 334
Target Start/End: Complemental strand, 36057791 - 36057663
Alignment:
Q  206 aaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttacagta 305  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |||| ||    
T  36057791 aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaacagcaccgccgcagctacaata 36057692  T
Q  306 ccaaaaccaccactatcacctcctcttac 334  Q
    ||||||| ||||| |||||||| ||||||    
T  36057691 ccaaaacaaccaccatcacctcatcttac 36057663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 206 - 334
Target Start/End: Complemental strand, 36058919 - 36058791
Alignment:
Q  206 aaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttacagta 305  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |||| ||    
T  36058919 aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaacagcaccgccgcagctacaata 36058820  T
Q  306 ccaaaaccaccactatcacctcctcttac 334  Q
    ||||||| ||||| |||||||| ||||||    
T  36058819 ccaaaacaaccaccatcacctcatcttac 36058791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 32946882 - 32946801
Alignment:
Q  201 gaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 282  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||    
T  32946882 gaaggaaacaaccaccacacaaaaacaccagacaacctgtgtttttctaacagctgcaaacttagcacccgcaaggaagaaa 32946801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 27109901 - 27110003
Alignment:
Q  232 acaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttacagtaccaaaaccaccactatcacctcctct 331  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||||||||||  | ||||| ||||| |||| || |||||||||||| ||||||||||||    
T  27109901 acaacctgtgtttttctaacaggcgcaaactcagcaaccacaaggaagaaaatagcaccgccgcagctacaatatcaaaaccaccaccatcacctcctct 27110000  T
Q  332 tac 334  Q
    |||    
T  27110001 tac 27110003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 27109777 - 27109875
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||| || |||||||||| ||||||||||||||||||||| ||||||||||||| | ||||  |||||| |||||||| ||||| |||||||||||||    
T  27109777 tcacagcagcaacaccatcgatccacatcgacaaaccaccagataacagagtagtcgaaccggatgagaatgttctgatcgaaccaaaccgttgaagac 27109875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 15115603 - 15115470
Alignment:
Q  202 aaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaag-aaac-caacaccgtcgcagtt 299  Q
    |||||| |||||||||||||||||||||| || || | ||| ||||||||| || ||||||||||||||||||    | |||| || ||||| ||||  |    
T  15115603 aaggaatcaaccaccacacaaaaacaccaaac-acttatgtttttctaacatccacaaactcagcacccacaaactcgcaaactcagcaccgccgcaact 15115505  T
Q  300 acagtaccaaaaccaccactatcacctcctcttac 334  Q
    ||| |||||||||||||||||||||||||||||||    
T  15115504 acaataccaaaaccaccactatcacctcctcttac 15115470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 15140119 - 15139986
Alignment:
Q  202 aaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaag-aaac-caacaccgtcgcagtt 299  Q
    |||||| |||||||||||||||||||||| || || | ||| ||||||||| || ||||||||||||||||||    | |||| || ||||| ||||  |    
T  15140119 aaggaatcaaccaccacacaaaaacaccaaac-acttatgtttttctaacatccacaaactcagcacccacaaactcgcaaactcagcaccgccgcaact 15140021  T
Q  300 acagtaccaaaaccaccactatcacctcctcttac 334  Q
    ||| |||||||||||||||||||||||||||||||    
T  15140020 acaataccaaaaccaccactatcacctcctcttac 15139986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 15123806 - 15123680
Alignment:
Q  209 caaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaacc--aacaccgtcgcagttacagtac 306  Q
    |||||||||||||||||||||| ||| | | ||| ||||||||| || ||||||||||||||||||    | || |  | ||||| ||||| |||| |||    
T  15123806 caaccaccacacaaaaacaccaaaca-cttatgtttttctaacatccacaaactcagcacccacaaactcgcaaactgagcaccgccgcagctacaatac 15123708  T
Q  307 caaaaccaccactatcacctcctcttac 334  Q
    ||||||||||||||||||||||||||||    
T  15123707 caaaaccaccactatcacctcctcttac 15123680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 15147994 - 15147868
Alignment:
Q  209 caaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaacc--aacaccgtcgcagttacagtac 306  Q
    |||||||||||||||||||||| ||| | | ||| ||||||||| || ||||||||||||||||||    | || |  | ||||| ||||| |||| |||    
T  15147994 caaccaccacacaaaaacaccaaaca-cttatgtttttctaacatccacaaactcagcacccacaaactcgcaaactgagcaccgccgcagctacaatac 15147896  T
Q  307 caaaaccaccactatcacctcctcttac 334  Q
    ||||||||||||||||||||||||||||    
T  15147895 caaaaccaccactatcacctcctcttac 15147868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 32947003 - 32946969
Alignment:
Q  80 tgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||||||||||||| |||||||||||||||||||    
T  32947003 tgagaaggttctgatcgaacccaaccgttgaagac 32946969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 191 - 334
Target Start/End: Complemental strand, 47393 - 47250
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 290  Q
    ||||||||  |||||||||||||||||||| ||  |||||| |||||||||| |||||||||| |||||||||||||||| ||||||||||| || || |    
T  47393 atctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgtttttctaacagtcgcaaactcagcacccgcaaggaagaaaacatcatc 47294  T
Q  291 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 334  Q
    | ||| | |||||||||||||||||||| ||||| |||||||||    
T  47293 gccgcggctacagtaccaaaaccaccaccatcacatcctcttac 47250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 47568 - 47470
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||| || |||||||||| |||||||||||||| |||||| ||||||||||||| | ||||  |||||  ||| |||| |||||||||||||||||||    
T  47568 tcacagcagcaacaccatcgatccacatcgacaacccaccagataacagagtagtcgaaccggatgagatagttatgatcgaacccaaccgttgaagac 47470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 191 - 334
Target Start/End: Original strand, 33758270 - 33758414
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 290  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||| || ||||    
T  33758270 atctggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaacggccgcaaactcagtacccacaagaaagaaaacagcacc 33758369  T
Q  291 gtcgcag-ttacagtaccaaaaccaccactatcacctcctcttac 334  Q
       |||| | ||||||||||||| ||||  |||||||||||||||    
T  33758370 actgcagctaacagtaccaaaactaccatcatcacctcctcttac 33758414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 191 - 334
Target Start/End: Original strand, 9436521 - 9436664
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 290  Q
    |||||||| |||||||||||  |||||||||||||||| ||| ||| ||||| ||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  9436521 atctggatcggaaggaaacatacaccacacaaaaacactagaaaacatgtgtttttctaagagccgcaaactcagcacccgcaaggaagaaagcaacacc 9436620  T
Q  291 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 334  Q
      | ||  ||  |||||||||||||| | | |||||||||||||    
T  9436621 accacaactattgtaccaaaaccaccgccaacacctcctcttac 9436664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 27632175 - 27632084
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 282  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||| |||| ||||||    
T  27632175 atctggatcggaaggaaacaaccaccacacaaaaacaccaaacaacttgtgcttttctaacagccgcaaactcagcacccgcaagaaagaaa 27632084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 36607852 - 36607762
Alignment:
Q  190 aatctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaaga 280  Q
    ||||||||| ||||||||||||||||||  |||||||| |||||||||||||| |||||||||||| |||||||   |||| |||||||||    
T  36607852 aatctggattggaaggaaacaaccaccaagcaaaaacatcagacaacctgtgtttttctaacagccacaaactccatacccgcaaggaaga 36607762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 9436355 - 9436444
Alignment:
Q  26 caacaccatcaatccacatcgacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||||||||| ||||||||||||||||||| | ||||||||||| | || | || |||||||||| ||||||||| || |||||||||||    
T  9436355 caacaccatcgatccacatcgacaaaccactagataacagagtaatcgaaccagatgagaaggttttgattgaactcagccgttgaagac 9436444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 33758095 - 33758193
Alignment:
Q  15 catcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaaga 113  Q
    |||||||||  |||||||||| |||||||||||||||||| || |||||  |||||| | || |  ||||||||||||||| ||||||||||||||||||    
T  33758095 catcacaacggcaacaccatcgatccacatcgacaaaccatcagataac--agtagtcgaactggatgagaaggttctgatcgaacccaaccgttgaaga 33758192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 36608026 - 36607987
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccacc 56  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  36608026 tcacaacaacaacaccatcgatccacatcgacaaaccacc 36607987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 20519119 - 20519210
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 282  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  20519119 atctggatcggaaggaaacaaccaccacacaaaaactccagacaacttgtgtttttctaacaaccgcaaactcagcacccacaaggaagaaa 20519210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 38149476 - 38149387
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaaga 280  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||    
T  38149476 atctggatcggaaggaaacaaccaccacacaaaaacaccagacaacatgtgtttttccaacaaccgcaaactcagcacccacaaggaaga 38149387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 32919476 - 32919386
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagaca-acctgtgtatttctaacagccgcaaactcagcacccacaaggaaga 280  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||| || ||||| |||| |||| ||||||||||||||||||||| |||||    
T  32919476 atctggatcggaaggaaacaaccaccacacaaaagcaccaaacacacatgtgtttttccaacaaccgcaaactcagcacccacaaagaaga 32919386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 38149639 - 38149553
Alignment:
Q  29 caccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||||| |||||| ||||||||||||||||||||||||||   | |||| |||||||||||||||| |||||| ||  ||||||||    
T  38149639 caccatcgatccacgtcgacaaaccaccaaataacagagtacccgaaccgggtgagaaggttctgatcgaacccgacaattgaagac 38149553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 32919630 - 32919543
Alignment:
Q  29 caccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgag-aaggttctgattgaacccaaccgttgaagac 114  Q
    ||||||| |||||| |||||||||||||| |||||||||||   | |||| ||||| ||||||||||||||||| ||| ||| |||||    
T  32919630 caccatcgatccacgtcgacaaaccaccagataacagagtacccgaaccgggtgagaaaggttctgattgaacctaacagttcaagac 32919543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 20518976 - 20519042
Alignment:
Q  49 aaaccaccaaataacagagtagttga-ccgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||||||| |||| |||||||| || |||  |||||| |||||||| |||||||||||||||||||    
T  20518976 aaaccaccagataaaagagtagtcgaaccggatgagaatgttctgatcgaacccaaccgttgaagac 20519042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 22696648 - 22696739
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 282  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  22696648 atctggatcggaaggaaacaaccaccacacataaacaccagataacctgtgtttttctaacagccgcaaactcagcacccgcaaggaagaaa 22696739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 34502968 - 34502877
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 282  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| |||||||||||    
T  34502968 atctggattggaaggaaacaacgaccacacaaaaacaacagacaacctgtgttttactaacaaccgcaaactcagcacccgcaaggaagaaa 34502877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 22696473 - 22696571
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||| || |||||||||| ||||| ||||||||||||||| |||| |||||||| | ||||  ||| |||||| |||| |||||||||||||||||||    
T  22696473 tcacagcagcaacaccatcgatccatatcgacaaaccaccagataatagagtagtcgaaccggatgaaaaggttatgatcgaacccaaccgttgaagac 22696571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 34503134 - 34503045
Alignment:
Q  26 caacaccatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||||||||| |||||||||  |||||||||| ||||||||||||| | || |  | |||||||||| || ||| |||||||||||||||    
T  34503134 caacaccatcgatccacatcagcaaaccaccagataacagagtagtcgaacaggcttagaaggttcttatcgaaaccaaccgttgaagac 34503045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 13032436 - 13032507
Alignment:
Q  202 aaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaa 274  Q
    |||||| |||||||||||||||||||||| || |||| ||| | ||||||| || |||||||| |||||||||    
T  13032436 aaggaatcaaccaccacacaaaaacaccaaac-acctatgtttatctaacatccacaaactcaacacccacaa 13032507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 5051490 - 5051586
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaac 287  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  ||| | ||||||| ||||||||||||||||| | ||||||||||| ||||    
T  5051490 atctggattggaaggaaacaaccaccacacaaaaacaccagacaatttgtatttttctaagagccgcaaactcagcacacgcaaggaagaaaacaac 5051586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 36593006 - 36593095
Alignment:
Q  191 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaaga 280  Q
    ||||||||  ||||||||||| |||||||||||||||||||||| | ||||| |||| |||| ||||||||||| |||||||||||||||    
T  36593006 atctggatcagaaggaaacaatcaccacacaaaaacaccagacagcatgtgtttttccaacaaccgcaaactcaacacccacaaggaaga 36593095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 36592831 - 36592929
Alignment:
Q  17 tcacaacaacaacaccatcaatccacatcgacaaaccaccaaataacagagtag-ttgaccgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    |||||||| || ||||||| |||||| |||||||||||||| ||||||||||||    |||| ||||||||||| |||| ||||||||| |||||||||    
T  36592831 tcacaacagcaccaccatcgatccacgtcgacaaaccaccagataacagagtagccaaaccgggtgagaaggttatgatcgaacccaacagttgaagac 36592929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 5051335 - 5051413
Alignment:
Q  37 atccacatcgacaaaccaccaaataacagagtagt-tgaccgagtgagaaggttctgattgaacccaaccgttgaagac 114  Q
    ||||||||| ||||||||||| |||||||||||||   ||||  |||||||||| |||| |||||||||||||||||||    
T  5051335 atccacatcaacaaaccaccatataacagagtagtcaaaccggatgagaaggttatgatcgaacccaaccgttgaagac 5051413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University