View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13441_low_20 (Length: 330)

Name: NF13441_low_20
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13441_low_20
NF13441_low_20
[»] chr1 (4 HSPs)
chr1 (12-232)||(17217262-17217486)
chr1 (12-238)||(17215613-17215845)
chr1 (241-324)||(17217881-17217964)
chr1 (241-285)||(17215248-17215292)
[»] chr8 (1 HSPs)
chr8 (12-238)||(24226613-24226845)
[»] chr3 (4 HSPs)
chr3 (18-180)||(424424-424592)
chr3 (25-167)||(424948-425095)
chr3 (200-238)||(425085-425123)
chr3 (241-285)||(425534-425578)
[»] chr4 (3 HSPs)
chr4 (94-191)||(14242941-14243038)
chr4 (127-180)||(14243018-14243071)
chr4 (127-180)||(14243188-14243241)
[»] chr2 (4 HSPs)
chr2 (94-191)||(6353491-6353588)
chr2 (127-180)||(6353568-6353621)
chr2 (127-180)||(6353738-6353791)
chr2 (141-182)||(7562806-7562847)
[»] chr5 (4 HSPs)
chr5 (127-180)||(3011211-3011263)
chr5 (141-182)||(8767705-8767746)
chr5 (141-180)||(3011096-3011135)
chr5 (29-70)||(3011021-3011062)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 17217262 - 17217486
Alignment:
Q  12 atatggtgttcaatgaagtattgtcaaaggctgcaagttattggatg---gatcaggaaaaggaaaagagaaggagagctttggtgaa-ttatgatgtca 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17217262 atatggtgttcaatgaagtaatgtcaaaggctgcaagttattggatgatggatcaggaaaaggaaaagagaaggagagctttggtgaaattatgatgtca 17217361  T
Q  108 tgttactagctgcttttatatgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgttactgtctacttgtgacagctttacagt 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||| |||| ||||||||| ||||||||    
T  17217362 tgttactagctgcttttatatgttttgttactatctacttcgagacaattttacagtttctgcatgttttattactatctatttgtgacagttttacagt 17217461  T
Q  208 ttctgcaattattgattaagacaat 232  Q
    |||||||||||||||||||||||||    
T  17217462 ttctgcaattattgattaagacaat 17217486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 17215845 - 17215613
Alignment:
Q  12 atatggtgttcaatgaagtattgtcaaaggctgcaagttattggatggatcaggaaaaggaaaagagaa----gg--agagctttggtgaattatgatgt 105  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||| |||| ||||||  || ||||     ||  | || |||| ||||||||||||     
T  17215845 atatgttgttcaataaagtattgtcaaaggctgcaggttattggatgaatcaagaaaagagaatgagagctttggtcaaag-tttgatgaattatgatgc 17215747  T
Q  106 catgttactagctgcttttatatgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgttactgtctactt-gtgacagctttac 204  Q
    ||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||| |||| ||||||||||||||| ||||||| ||||||| |||||    
T  17215746 catgttactaggtgcttttatatgttttgttactatctacttcaaaacaattttacagtttctgcatgttttgttactatctacttcgtgacagttttac 17215647  T
Q  205 agtttctgcaattattgattaagacaatatgttg 238  Q
     |||||  ||||||||||||||||||||||||||    
T  17215646 ggtttcaacaattattgattaagacaatatgttg 17215613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 17217881 - 17217964
Alignment:
Q  241 actccaaaacatcacattcttcaaattcaaagcctaactaatcaaattcaactcctaggagctatatggtgatgtgtaacacta 324  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||    
T  17217881 actccaaaacatcacattcttcaaattcaaagcctaactactaaaattcaactcctaggagctatatggtgaagtgtaacacta 17217964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 17215292 - 17215248
Alignment:
Q  241 actccaaaacatcacattcttcaaattcaaagcctaactaatcaa 285  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||    
T  17215292 actccaaaacattacatttttcaaattcaaagcctaactaatcaa 17215248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 24226613 - 24226845
Alignment:
Q  12 atatggtgttcaatgaagtattgtcaaaggctgcaagttattggatggatcaggaaaaggaaaagagaag-----gaga-gctttggtgaattatgatgt 105  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||| |||||  || || |||     | || | |||| |||||||||||||    
T  24226613 atatgttgttcaatgaagtattatcaaaggttgcaagttattggatggatcagaaaaagataagga-aagcttttgtgaaggtttgatgaattatgatgt 24226711  T
Q  106 catgttactagctgcttttatatgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgttactgtctactt-gtgacagctttac 204  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||| | |||  ||||||||||||||| |||||||   |||   |||||    
T  24226712 catgttactagttgcttttatatattttgttactatctacttcgagataattttatagtttatgcatgttttgttactatctacttcaagactattttac 24226811  T
Q  205 agtttctgcaattattgattaagacaatatgttg 238  Q
     |||||| ||||| ||||||||||||||||||||    
T  24226812 ggtttctacaattcttgattaagacaatatgttg 24226845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 424592 - 424424
Alignment:
Q  18 tgttcaatgaagtattgtcaaaggctgcaagttattggatggatcaggaaaaggaaaagaga------aggagagctttggtgaattatgatgtcatgtt 111  Q
    ||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||  || ||||      | || || |||| |||||||||||||||||||    
T  424592 tgttcaacgaagtattgtcgaaggcttcaagttattggatagatcaggaaaagagaaggagagctttgatgaaag-tttgatgaattatgatgtcatgtt 424494  T
Q  112 actagctgcttttatatg-ttttgttaatatctacttcgagacaattttacaatttcagcatgttttgtt 180  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||| || || ||||||    
T  424493 actagctgtttttatatgtttttgttaataactacttcgagacaattttacagtttctgcttggtttgtt 424424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 424948 - 425095
Alignment:
Q  25 tgaagtattgtcaaaggctgcaagttattggatggatcaggaaaaggaaaagagaaggagagctttggtgaa-----------ttatgatgtcatgttac 113  Q
    |||||||||||||| | |||||||||||||||||||| |||||| |      ||||||||||||||||||||           |||||||||||||||||    
T  424948 tgaagtattgtcaacgtctgcaagttattggatggattaggaaacg------agaaggagagctttggtgaaagtttgatgaattatgatgtcatgttac 425041  T
Q  114 tagctgcttttatatgttttgttaatatctacttcgagacaattttacaatttc 167  Q
    || || ||||||||||||||| |  |||||||||||||||||||||||| ||||    
T  425042 taacttcttttatatgttttggtgctatctacttcgagacaattttacagtttc 425095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 425085 - 425123
Alignment:
Q  200 tttacagtttctgcaattattgattaagacaatatgttg 238  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  425085 tttacagtttctgcaattcttgattaagacaatatgttg 425123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 425534 - 425578
Alignment:
Q  241 actccaaaacatcacattcttcaaattcaaagcctaactaatcaa 285  Q
    |||||||||||| |||||||| || ||||||||||||||||||||    
T  425534 actccaaaacattacattctttaatttcaaagcctaactaatcaa 425578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 14242941 - 14243038
Alignment:
Q  94 gaattatgatgtcatgttactagctgcttttatatgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgttactgtctactt 191  Q
    ||||||||||||||||| || |||||| ||||| |||||||||| || |||||||||||||||||||||||||| |||||||||||| || |||||||    
T  14242941 gaattatgatgtcatgtcaccagctgcgtttatttgttttgttactacctacttcgagacaattttacaatttctgcatgttttgtttctatctactt 14243038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 14243018 - 14243071
Alignment:
Q  127 atgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgtt 180  Q
    ||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||    
T  14243018 atgttttgtttctatctacttcgagacaaatttacaatttctgcatgttttgtt 14243071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 14243188 - 14243241
Alignment:
Q  127 atgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgtt 180  Q
    ||||||||||  ||||||||||||||||||||||||||  | ||||||||||||    
T  14243188 atgttttgtttctatctacttcgagacaattttacaatgcctgcatgttttgtt 14243241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 6353491 - 6353588
Alignment:
Q  94 gaattatgatgtcatgttactagctgcttttatatgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgttactgtctactt 191  Q
    ||||||||||||||||| || |||||| ||||| |||||||||| || |||||||||||||||||||||||||| |||||||||||| || |||||||    
T  6353491 gaattatgatgtcatgtcaccagctgcgtttatttgttttgttactacctacttcgagacaattttacaatttctgcatgttttgtttctatctactt 6353588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 6353568 - 6353621
Alignment:
Q  127 atgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgtt 180  Q
    ||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||    
T  6353568 atgttttgtttctatctacttcgagacaaatttacaatttctgcatgttttgtt 6353621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 6353738 - 6353791
Alignment:
Q  127 atgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgtt 180  Q
    ||||||||||  ||||||||||||||||||||||||||  | ||||||||||||    
T  6353738 atgttttgtttctatctacttcgagacaattttacaatgcctgcatgttttgtt 6353791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 7562806 - 7562847
Alignment:
Q  141 tctacttcgagacaattttacaatttcagcatgttttgttac 182  Q
    ||||||| |||||||||||| |||||| ||||||||||||||    
T  7562806 tctactttgagacaattttaaaatttctgcatgttttgttac 7562847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 3011211 - 3011263
Alignment:
Q  127 atgttttgttaatatctacttcgagacaattttacaatttcagcatgttttgtt 180  Q
    ||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||    
T  3011211 atgttttgtttctatctactt-gagacaattttacaatttctgcatgttttgtt 3011263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 8767746 - 8767705
Alignment:
Q  141 tctacttcgagacaattttacaatttcagcatgttttgttac 182  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  8767746 tctactttgagacaattttacaatttctgcatgttttgttac 8767705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 3011096 - 3011135
Alignment:
Q  141 tctacttcgagacaattttacaatttcagcatgttttgtt 180  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  3011096 tctacttcaagacaattttacaatttctgcatgttttgtt 3011135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 3011021 - 3011062
Alignment:
Q  29 gtattgtcaaaggctgcaagttattggatggatcaggaaaag 70  Q
    |||||| ||||||||||||||||||||| || ||||||||||    
T  3011021 gtattgccaaaggctgcaagttattggaaggttcaggaaaag 3011062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University