View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13441_low_21 (Length: 317)

Name: NF13441_low_21
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13441_low_21
NF13441_low_21
[»] chr7 (10 HSPs)
chr7 (174-317)||(15121318-15121461)
chr7 (184-317)||(47589146-47589279)
chr7 (174-265)||(26199886-26199980)
chr7 (183-253)||(36934343-36934413)
chr7 (193-265)||(5892812-5892884)
chr7 (15-97)||(5892978-5893061)
chr7 (11-97)||(36934181-36934268)
chr7 (23-97)||(26199734-26199809)
chr7 (15-85)||(40074342-40074413)
chr7 (29-97)||(15121538-15121606)
[»] chr3 (8 HSPs)
chr3 (174-317)||(51056642-51056785)
chr3 (177-264)||(25498946-25499033)
chr3 (239-317)||(38258950-38259028)
chr3 (11-97)||(25498778-25498865)
chr3 (185-242)||(49358685-49358743)
chr3 (22-93)||(38258775-38258847)
chr3 (270-317)||(51485079-51485126)
chr3 (20-53)||(17113764-17113797)
[»] chr4 (14 HSPs)
chr4 (185-317)||(50589695-50589827)
chr4 (174-317)||(14792338-14792481)
chr4 (174-265)||(12888347-12888438)
chr4 (177-317)||(51407142-51407283)
chr4 (15-97)||(12888187-12888270)
chr4 (11-97)||(18357033-18357120)
chr4 (177-252)||(18357200-18357274)
chr4 (177-252)||(18431533-18431607)
chr4 (11-97)||(18431687-18431774)
chr4 (15-88)||(23533299-23533373)
chr4 (15-97)||(14792178-14792261)
chr4 (15-97)||(50589523-50589606)
chr4 (32-93)||(3926263-3926325)
chr4 (63-97)||(51407363-51407397)
[»] chr1 (10 HSPs)
chr1 (189-317)||(36057663-36057791)
chr1 (189-317)||(36058791-36058919)
chr1 (184-265)||(32946801-32946882)
chr1 (215-317)||(27109901-27110003)
chr1 (185-317)||(15115470-15115603)
chr1 (185-317)||(15139986-15140119)
chr1 (192-317)||(15123680-15123806)
chr1 (192-317)||(15147868-15147994)
chr1 (15-97)||(27109792-27109875)
chr1 (63-97)||(32946969-32947003)
[»] scaffold0005 (2 HSPs)
scaffold0005 (174-317)||(47250-47393)
scaffold0005 (15-97)||(47470-47553)
[»] chr5 (6 HSPs)
chr5 (174-317)||(33758270-33758414)
chr5 (174-317)||(9436521-9436664)
chr5 (174-265)||(27632084-27632175)
chr5 (173-263)||(36607762-36607852)
chr5 (15-97)||(9436361-9436444)
chr5 (15-97)||(33758112-33758193)
[»] chr8 (6 HSPs)
chr8 (174-265)||(20519119-20519210)
chr8 (174-263)||(38149387-38149476)
chr8 (174-263)||(32919386-32919476)
chr8 (15-97)||(38149553-38149636)
chr8 (32-97)||(20518976-20519042)
chr8 (15-97)||(32919543-32919627)
[»] chr6 (4 HSPs)
chr6 (174-265)||(22696648-22696739)
chr6 (174-265)||(34502877-34502968)
chr6 (15-97)||(22696488-22696571)
chr6 (185-257)||(13032436-13032507)
[»] chr2 (4 HSPs)
chr2 (174-270)||(5051490-5051586)
chr2 (174-263)||(36593006-36593095)
chr2 (20-97)||(5051335-5051413)
chr2 (15-97)||(36592846-36592929)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 15121461 - 15121318
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 273  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  15121461 atctggatcggaaggaaacatccaccacacaaaagcaccagacaacctatgtttttctaagagccgcaaactcagcacccgcaaggaagaaaccaacacc 15121362  T
Q  274 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 317  Q
    | ||||  ||| ||| |||||||||||| | |||||||||||||    
T  15121361 gccgcaactaccgtatcaaaaccaccaccaacacctcctcttac 15121318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 184 - 317
Target Start/End: Original strand, 47589146 - 47589279
Alignment:
Q  184 gaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagtta 283  Q
    |||||||||  ||||||||||||||||||| ||||||||||| ||||||| || ||||||||||  |||||| ||||||||| || ||||| ||||  ||    
T  47589146 gaaggaaacgtccaccacacaaaaacaccaaacaacctgtgtttttctaaaagtcgcaaactcaatacccacgaggaagaaaacagcaccgccgcaacta 47589245  T
Q  284 cagtaccaaaaccaccactatcacctcctcttac 317  Q
    |||||||||||||||||| |||||||| ||||||    
T  47589246 cagtaccaaaaccaccaccatcacctcttcttac 47589279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 26199886 - 26199980
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaac---ctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 265  Q
    |||||||| |||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||   ||||||||||    
T  26199886 atctggatcggaaggaaacaaccaccacacaaaaacaccagacaaccaactgtgtttttctaacagccgcaaactcagcaccaggaaggaagaaa 26199980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 36934343 - 36934413
Alignment:
Q  183 ggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcaccc 253  Q
    ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  36934343 ggaaggaaacatccaccacacaaaaacaccagacaaactgtgtttttctaacagccgcaaactcagcaccc 36934413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 5892884 - 5892812
Alignment:
Q  193 aaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 265  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||    
T  5892884 aaccaccacacaaaaacaccagacaacctgtgtttttctaatagccgcaaactcagcatccgcaaggaagaaa 5892812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 5893061 - 5892978
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttga-ccgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||||||||||||||||||||||||| ||||||||||| | || |||  |||||||||||||||||||||||||||||||||||    
T  5893061 catcaatccacatcgacaaaccaccagataacagagtaatcgaaccggatgagaaggttctgattgaacccaaccgttgaagac 5892978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 36934181 - 36934268
Alignment:
Q  11 acatcatcaatccacatcgacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccgttgaagac 97  Q
    ||||||||||||||||  | |||||||||| |||| |||||||| || | || ||||||||||||||| |||||||||||||||||||    
T  36934181 acatcatcaatccacactggcaaaccaccagataatagagtagtcgaaccagatgagaaggttctgatcgaacccaaccgttgaagac 36934268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 26199734 - 26199809
Alignment:
Q  23 cacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    ||||||||||||||||||||||| |||||||| | |||   ||||||||| ||||| |||||||||| ||||||||    
T  26199734 cacatcgacaaaccaccaaataatagagtagtcgaacctgatgagaaggtactgatcgaacccaaccattgaagac 26199809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 40074413 - 40074342
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaaccca 85  Q
    |||| |||||| |||||||||||||| |||||| |||||| | ||||  ||||||||||||||| |||||||    
T  40074413 catcgatccacctcgacaaaccaccagataacatagtagtcgaaccggatgagaaggttctgatcgaaccca 40074342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 15121606 - 15121538
Alignment:
Q  29 gacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| |||| |||||||||||||||| || | || ||||||||||||||| ||| |||||||||||||||    
T  15121606 gacataccaacaaataacagagtagtcgaaccagatgagaaggttctgatcgaa-ccaaccgttgaagac 15121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 51056785 - 51056642
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 273  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||   |||||||||| ||||||     
T  51056785 atctggatcagaaggaaacaaccaccatacaaaaacaccagacaacctgtgttgttctaacaaccgcaaactcagcacctgtaaggaagaaaacaacact 51056686  T
Q  274 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 317  Q
    ||||||| |||| ||||||||| ||||| |||||||||||||||    
T  51056685 gtcgcagctacaataccaaaacgaccaccatcacctcctcttac 51056642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 25498946 - 25499033
Alignment:
Q  177 tggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaa 264  Q
    ||||| ||||||||||||||||||| || |||||||||| ||| ||||| ||||||||||||||||||||| || || ||||||||||    
T  25498946 tggatcggaaggaaacaaccaccacgcataaacaccagataacttgtgtttttctaacagccgcaaactcaacatccgcaaggaagaa 25499033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 38258950 - 38259028
Alignment:
Q  239 gcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttacagtaccaaaaccaccactatcacctcctcttac 317  Q
    |||||||||| |||| ||||||||||| |||||||  ||||| || ||||||||||||||||| |||||||||||||||    
T  38258950 gcaaactcagtacccgcaaggaagaaaacaacaccaccgcagctaaagtaccaaaaccaccacaatcacctcctcttac 38259028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 25498778 - 25498865
Alignment:
Q  11 acatcatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||||||||||||||||||||||||||| | |||| |||||||| | ||||  ||| ||||||||||| ||| |||||||||||||||    
T  25498778 acatcatcaatccacatcgacaaaccactagataatagagtagtcgaaccggatgaaaaggttctgatcgaaaccaaccgttgaagac 25498865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 49358685 - 49358743
Alignment:
Q  185 aaggaaacaaccaccacacaaaaacaccagacaacctgtg-tatttctaacagccgcaa 242  Q
    ||||||||||||||||||||||||||| ||||||| |||| | ||||||||| ||||||    
T  49358685 aaggaaacaaccaccacacaaaaacactagacaacttgtgctttttctaacacccgcaa 49358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 38258775 - 38258847
Alignment:
Q  22 ccacatcgacaaaccaccaaataacagagtagttga-ccgagtgagaaggttctgattgaacccaaccgttga 93  Q
    |||||| |||||||||||| |||| || ||||| || |||  ||||||||||||||| |||||||||||||||    
T  38258775 ccacatagacaaaccaccagataatagggtagtcgaaccggatgagaaggttctgatcgaacccaaccgttga 38258847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 51485079 - 51485126
Alignment:
Q  270 caccgtcgcagttacagtaccaaaaccaccactatcacctcctcttac 317  Q
    ||||| ||||| |||| ||||||||||||||| |||||||||||||||    
T  51485079 caccgccgcagctacaataccaaaaccaccaccatcacctcctcttac 51485126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 17113797 - 17113764
Alignment:
Q  20 atccacatcgacaaaccaccaaataacagagtag 53  Q
    ||||||||||||||||||||| ||||||||||||    
T  17113797 atccacatcgacaaaccaccagataacagagtag 17113764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 317
Target Start/End: Original strand, 50589695 - 50589827
Alignment:
Q  185 aaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttac 284  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||  || |||||||| ||||| |||||||  |||    
T  50589695 aaggaaacaaccaccacacataaacaccaaacaacatgtgtatttctaacagtcgcaaactcagcacctgcatggaagaaaacaacatcgtcgcaactac 50589794  T
Q  285 agtaccaaaaccaccactatcacctcctcttac 317  Q
    |||||| |||||||||| |||||||||||||||    
T  50589795 agtacctaaaccaccaccatcacctcctcttac 50589827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 174 - 317
Target Start/End: Original strand, 14792338 - 14792481
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 273  Q
    ||||||||  |||||||||||||||||||| ||  |||||| |||||||||| |||||||||| |||||||||||||||| ||||||||||| || || |    
T  14792338 atctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgtttttctaacagtcgcaaactcagcacccgcaaggaagaaaacatcatc 14792437  T
Q  274 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 317  Q
    | ||| | |||||||||||||||||||| ||||| |||||||||    
T  14792438 gccgcggctacagtaccaaaaccaccaccatcacatcctcttac 14792481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 12888347 - 12888438
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 265  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||    
T  12888347 atctggatcagaaggaaacaaccaccgcacaaaaacaccagacaacctgtgttttactaacagccgcaaactcagcacccgcaaggaagaaa 12888438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 317
Target Start/End: Complemental strand, 51407283 - 51407142
Alignment:
Q  177 tggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtc 276  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| || | ||       
T  51407283 tggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcacccacaagaaagaaaacagccccact 51407184  T
Q  277 gcagtta-cagtaccaaaaccaccactatcacctcctcttac 317  Q
    |||  || |||||||||||| ||||  |||||||||||||||    
T  51407183 gcaactagcagtaccaaaactaccatcatcacctcctcttac 51407142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 12888187 - 12888270
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| ||||||||||||||||||||| ||||||||||||| | | ||  |||||||| |||||| |||||||||||||||||||    
T  12888187 catcgatccacatcgacaaaccaccagataacagagtagtcgaatcggatgagaaggatctgatcgaacccaaccgttgaagac 12888270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 18357033 - 18357120
Alignment:
Q  11 acatcatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||||||| ||||||||||||||| ||| | ||||||||||||| | ||||  ||||||| ||||||| |||||||||||||||||||    
T  18357033 acatcatcgatccacatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccgttgaagac 18357120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 18357200 - 18357274
Alignment:
Q  177 tggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacc 252  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||| | || |||||||| ||||||||||||||    
T  18357200 tggatcggaaggaaa-aaccatcacacaaaaacaccagacaacctgtattttcctaacagctgcaaactcagcacc 18357274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 18431607 - 18431533
Alignment:
Q  177 tggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacc 252  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||| | || |||||||| ||||||||||||||    
T  18431607 tggatcggaaggaaa-aaccatcacacaaaaacaccagacaacctgtattttcctaacagctgcaaactcagcacc 18431533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 18431774 - 18431687
Alignment:
Q  11 acatcatcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||||||| ||||||||||||||| ||| | ||||||||||||| | ||||  ||||||| ||||||| |||||||||||||||||||    
T  18431774 acatcatcgatccacatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccgttgaagac 18431687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 23533299 - 23533373
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaacc 88  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||| |||| ||| ||||||    
T  23533299 catcaatccacatcgacaaaccaccagataacagagtacttgaaccgggtgagaaggttatgatcgaatccaacc 23533373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 14792178 - 14792261
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| |||||||||||||| |||||| ||||||||||||| | ||||  |||||  ||| |||| |||||||||||||||||||    
T  14792178 catcgatccacatcgacaacccaccagataacagagtagtcgaaccggatgagatagttatgatcgaacccaaccgttgaagac 14792261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 50589523 - 50589606
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    ||||||||||||||||||||| |||| ||||||||| ||| | |||| ||| ||||||| |||| |||||||||| | ||||||    
T  50589523 catcaatccacatcgacaaactaccagataacagagcagtcgaaccgggtgggaaggttttgatcgaacccaaccatcgaagac 50589606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 3926263 - 3926325
Alignment:
Q  32 aaaccaccaaataacagagtagttga-ccgagtgagaaggttctgattgaacccaaccgttga 93  Q
    ||||||||| ||||||||||||| || |||  ||||||||||||||| |||||||||| ||||    
T  3926263 aaaccaccagataacagagtagtcgaaccggatgagaaggttctgatcgaacccaaccattga 3926325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 51407397 - 51407363
Alignment:
Q  63 tgagaaggttctgattgaacccaaccgttgaagac 97  Q
    ||||||||||||||| |||||||||||||||||||    
T  51407397 tgagaaggttctgatcgaacccaaccgttgaagac 51407363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 36057791 - 36057663
Alignment:
Q  189 aaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttacagta 288  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |||| ||    
T  36057791 aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaacagcaccgccgcagctacaata 36057692  T
Q  289 ccaaaaccaccactatcacctcctcttac 317  Q
    ||||||| ||||| |||||||| ||||||    
T  36057691 ccaaaacaaccaccatcacctcatcttac 36057663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 36058919 - 36058791
Alignment:
Q  189 aaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttacagta 288  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |||| ||    
T  36058919 aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaacagcaccgccgcagctacaata 36058820  T
Q  289 ccaaaaccaccactatcacctcctcttac 317  Q
    ||||||| ||||| |||||||| ||||||    
T  36058819 ccaaaacaaccaccatcacctcatcttac 36058791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 32946882 - 32946801
Alignment:
Q  184 gaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 265  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||    
T  32946882 gaaggaaacaaccaccacacaaaaacaccagacaacctgtgtttttctaacagctgcaaacttagcacccgcaaggaagaaa 32946801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 27109901 - 27110003
Alignment:
Q  215 acaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacaccgtcgcagttacagtaccaaaaccaccactatcacctcctct 314  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||||||||||  | ||||| ||||| |||| || |||||||||||| ||||||||||||    
T  27109901 acaacctgtgtttttctaacaggcgcaaactcagcaaccacaaggaagaaaatagcaccgccgcagctacaatatcaaaaccaccaccatcacctcctct 27110000  T
Q  315 tac 317  Q
    |||    
T  27110001 tac 27110003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 15115603 - 15115470
Alignment:
Q  185 aaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaag-aaac-caacaccgtcgcagtt 282  Q
    |||||| |||||||||||||||||||||| || || | ||| ||||||||| || ||||||||||||||||||    | |||| || ||||| ||||  |    
T  15115603 aaggaatcaaccaccacacaaaaacaccaaac-acttatgtttttctaacatccacaaactcagcacccacaaactcgcaaactcagcaccgccgcaact 15115505  T
Q  283 acagtaccaaaaccaccactatcacctcctcttac 317  Q
    ||| |||||||||||||||||||||||||||||||    
T  15115504 acaataccaaaaccaccactatcacctcctcttac 15115470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 15140119 - 15139986
Alignment:
Q  185 aaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaag-aaac-caacaccgtcgcagtt 282  Q
    |||||| |||||||||||||||||||||| || || | ||| ||||||||| || ||||||||||||||||||    | |||| || ||||| ||||  |    
T  15140119 aaggaatcaaccaccacacaaaaacaccaaac-acttatgtttttctaacatccacaaactcagcacccacaaactcgcaaactcagcaccgccgcaact 15140021  T
Q  283 acagtaccaaaaccaccactatcacctcctcttac 317  Q
    ||| |||||||||||||||||||||||||||||||    
T  15140020 acaataccaaaaccaccactatcacctcctcttac 15139986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 15123806 - 15123680
Alignment:
Q  192 caaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaacc--aacaccgtcgcagttacagtac 289  Q
    |||||||||||||||||||||| ||| | | ||| ||||||||| || ||||||||||||||||||    | || |  | ||||| ||||| |||| |||    
T  15123806 caaccaccacacaaaaacaccaaaca-cttatgtttttctaacatccacaaactcagcacccacaaactcgcaaactgagcaccgccgcagctacaatac 15123708  T
Q  290 caaaaccaccactatcacctcctcttac 317  Q
    ||||||||||||||||||||||||||||    
T  15123707 caaaaccaccactatcacctcctcttac 15123680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 15147994 - 15147868
Alignment:
Q  192 caaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaacc--aacaccgtcgcagttacagtac 289  Q
    |||||||||||||||||||||| ||| | | ||| ||||||||| || ||||||||||||||||||    | || |  | ||||| ||||| |||| |||    
T  15147994 caaccaccacacaaaaacaccaaaca-cttatgtttttctaacatccacaaactcagcacccacaaactcgcaaactgagcaccgccgcagctacaatac 15147896  T
Q  290 caaaaccaccactatcacctcctcttac 317  Q
    ||||||||||||||||||||||||||||    
T  15147895 caaaaccaccactatcacctcctcttac 15147868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 27109792 - 27109875
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| ||||||||||||||||||||| ||||||||||||| | ||||  |||||| |||||||| ||||| |||||||||||||    
T  27109792 catcgatccacatcgacaaaccaccagataacagagtagtcgaaccggatgagaatgttctgatcgaaccaaaccgttgaagac 27109875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 32947003 - 32946969
Alignment:
Q  63 tgagaaggttctgattgaacccaaccgttgaagac 97  Q
    ||||||||||||||| |||||||||||||||||||    
T  32947003 tgagaaggttctgatcgaacccaaccgttgaagac 32946969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 47393 - 47250
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 273  Q
    ||||||||  |||||||||||||||||||| ||  |||||| |||||||||| |||||||||| |||||||||||||||| ||||||||||| || || |    
T  47393 atctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgtttttctaacagtcgcaaactcagcacccgcaaggaagaaaacatcatc 47294  T
Q  274 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 317  Q
    | ||| | |||||||||||||||||||| ||||| |||||||||    
T  47293 gccgcggctacagtaccaaaaccaccaccatcacatcctcttac 47250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 47553 - 47470
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| |||||||||||||| |||||| ||||||||||||| | ||||  |||||  ||| |||| |||||||||||||||||||    
T  47553 catcgatccacatcgacaacccaccagataacagagtagtcgaaccggatgagatagttatgatcgaacccaaccgttgaagac 47470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 317
Target Start/End: Original strand, 33758270 - 33758414
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 273  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||| || ||||    
T  33758270 atctggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaacggccgcaaactcagtacccacaagaaagaaaacagcacc 33758369  T
Q  274 gtcgcag-ttacagtaccaaaaccaccactatcacctcctcttac 317  Q
       |||| | ||||||||||||| ||||  |||||||||||||||    
T  33758370 actgcagctaacagtaccaaaactaccatcatcacctcctcttac 33758414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 317
Target Start/End: Original strand, 9436521 - 9436664
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaacacc 273  Q
    |||||||| |||||||||||  |||||||||||||||| ||| ||| ||||| ||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  9436521 atctggatcggaaggaaacatacaccacacaaaaacactagaaaacatgtgtttttctaagagccgcaaactcagcacccgcaaggaagaaagcaacacc 9436620  T
Q  274 gtcgcagttacagtaccaaaaccaccactatcacctcctcttac 317  Q
      | ||  ||  |||||||||||||| | | |||||||||||||    
T  9436621 accacaactattgtaccaaaaccaccgccaacacctcctcttac 9436664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 27632175 - 27632084
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 265  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||| |||| ||||||    
T  27632175 atctggatcggaaggaaacaaccaccacacaaaaacaccaaacaacttgtgcttttctaacagccgcaaactcagcacccgcaagaaagaaa 27632084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 36607852 - 36607762
Alignment:
Q  173 aatctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaaga 263  Q
    ||||||||| ||||||||||||||||||  |||||||| |||||||||||||| |||||||||||| |||||||   |||| |||||||||    
T  36607852 aatctggattggaaggaaacaaccaccaagcaaaaacatcagacaacctgtgtttttctaacagccacaaactccatacccgcaaggaaga 36607762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 9436361 - 9436444
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| ||||||||||||||||||| | ||||||||||| | || | || |||||||||| ||||||||| || |||||||||||    
T  9436361 catcgatccacatcgacaaaccactagataacagagtaatcgaaccagatgagaaggttttgattgaactcagccgttgaagac 9436444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 33758112 - 33758193
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttgaccgag-tgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| |||||||||||||||||| || |||||||  |||| || |  | ||||||||||||||| |||||||||||||||||||    
T  33758112 catcgatccacatcgacaaaccatcagataacag--tagtcgaactggatgagaaggttctgatcgaacccaaccgttgaagac 33758193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 20519119 - 20519210
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 265  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  20519119 atctggatcggaaggaaacaaccaccacacaaaaactccagacaacttgtgtttttctaacaaccgcaaactcagcacccacaaggaagaaa 20519210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 38149476 - 38149387
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaaga 263  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||    
T  38149476 atctggatcggaaggaaacaaccaccacacaaaaacaccagacaacatgtgtttttccaacaaccgcaaactcagcacccacaaggaaga 38149387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 32919476 - 32919386
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagaca-acctgtgtatttctaacagccgcaaactcagcacccacaaggaaga 263  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||| || ||||| |||| |||| ||||||||||||||||||||| |||||    
T  32919476 atctggatcggaaggaaacaaccaccacacaaaagcaccaaacacacatgtgtttttccaacaaccgcaaactcagcacccacaaagaaga 32919386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 38149636 - 38149553
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| |||||| ||||||||||||||||||||||||||   | |||| |||||||||||||||| |||||| ||  ||||||||    
T  38149636 catcgatccacgtcgacaaaccaccaaataacagagtacccgaaccgggtgagaaggttctgatcgaacccgacaattgaagac 38149553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 20518976 - 20519042
Alignment:
Q  32 aaaccaccaaataacagagtagttga-ccgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    ||||||||| |||| |||||||| || |||  |||||| |||||||| |||||||||||||||||||    
T  20518976 aaaccaccagataaaagagtagtcgaaccggatgagaatgttctgatcgaacccaaccgttgaagac 20519042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 32919627 - 32919543
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgag-aaggttctgattgaacccaaccgttgaagac 97  Q
    |||| |||||| |||||||||||||| |||||||||||   | |||| ||||| ||||||||||||||||| ||| ||| |||||    
T  32919627 catcgatccacgtcgacaaaccaccagataacagagtacccgaaccgggtgagaaaggttctgattgaacctaacagttcaagac 32919543  T

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Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 22696648 - 22696739
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 265  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  22696648 atctggatcggaaggaaacaaccaccacacataaacaccagataacctgtgtttttctaacagccgcaaactcagcacccgcaaggaagaaa 22696739  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 34502968 - 34502877
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaa 265  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| |||||||||||    
T  34502968 atctggattggaaggaaacaacgaccacacaaaaacaacagacaacctgtgttttactaacaaccgcaaactcagcacccgcaaggaagaaa 34502877  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 22696488 - 22696571
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtagttg-accgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| ||||| ||||||||||||||| |||| |||||||| | ||||  ||| |||||| |||| |||||||||||||||||||    
T  22696488 catcgatccatatcgacaaaccaccagataatagagtagtcgaaccggatgaaaaggttatgatcgaacccaaccgttgaagac 22696571  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 13032436 - 13032507
Alignment:
Q  185 aaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaa 257  Q
    |||||| |||||||||||||||||||||| || |||| ||| | ||||||| || |||||||| |||||||||    
T  13032436 aaggaatcaaccaccacacaaaaacaccaaac-acctatgtttatctaacatccacaaactcaacacccacaa 13032507  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 5051490 - 5051586
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaagaaaccaac 270  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  ||| | ||||||| ||||||||||||||||| | ||||||||||| ||||    
T  5051490 atctggattggaaggaaacaaccaccacacaaaaacaccagacaatttgtatttttctaagagccgcaaactcagcacacgcaaggaagaaaacaac 5051586  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 36593006 - 36593095
Alignment:
Q  174 atctggatgggaaggaaacaaccaccacacaaaaacaccagacaacctgtgtatttctaacagccgcaaactcagcacccacaaggaaga 263  Q
    ||||||||  ||||||||||| |||||||||||||||||||||| | ||||| |||| |||| ||||||||||| |||||||||||||||    
T  36593006 atctggatcagaaggaaacaatcaccacacaaaaacaccagacagcatgtgtttttccaacaaccgcaaactcaacacccacaaggaaga 36593095  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 5051335 - 5051413
Alignment:
Q  20 atccacatcgacaaaccaccaaataacagagtagt-tgaccgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    ||||||||| ||||||||||| |||||||||||||   ||||  |||||||||| |||| |||||||||||||||||||    
T  5051335 atccacatcaacaaaccaccatataacagagtagtcaaaccggatgagaaggttatgatcgaacccaaccgttgaagac 5051413  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 36592846 - 36592929
Alignment:
Q  15 catcaatccacatcgacaaaccaccaaataacagagtag-ttgaccgagtgagaaggttctgattgaacccaaccgttgaagac 97  Q
    |||| |||||| |||||||||||||| ||||||||||||    |||| ||||||||||| |||| ||||||||| |||||||||    
T  36592846 catcgatccacgtcgacaaaccaccagataacagagtagccaaaccgggtgagaaggttatgatcgaacccaacagttgaagac 36592929  T

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