View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13441_low_24 (Length: 250)
Name: NF13441_low_24
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 45985316 - 45985547
Alignment:
| Q |
13 |
aatatactcaaacaatttttgaagtgatgattcttttgttcctcacacgctcaatactcacaacttgatgtcaacaaatctaaaagctatagcaacattt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45985316 |
aatatactcaaacaatttttgaagtgatgattcttttgttcctcacacgctcaatactcacaccttgatgtcaacaaatctaaaagctatagcaacattt |
45985415 |
T |
|
| Q |
113 |
agacctttgtaatacctgaattacaacaaggaggtaatgatactcttcctagttgacactagcacaaggacgtcaaggtgtagattgctcaatttttgaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45985416 |
agacctttgtaatacctgaattacaacaaggaggtaatgatactcttcctagttgacacttgcacaaggccgtcaaggtgtagattgctcaatttttgaa |
45985515 |
T |
|
| Q |
213 |
aagatagcatatgctacaatggatgaagaagc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45985516 |
aagatagcatatgctacaatggatgaagaagc |
45985547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University