View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13441_low_25 (Length: 238)

Name: NF13441_low_25
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13441_low_25
NF13441_low_25
[»] chr2 (2 HSPs)
chr2 (11-238)||(14228006-14228233)
chr2 (11-236)||(14231619-14231844)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 14228006 - 14228233
Alignment:
Q  11 catcatcactcaaacacttaaaagccttagaaactttcttaaacgcatcttcggaacccggtgctttattcttatcaggatgaactttcaaagacaattt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14228006 catcatcactcaaacacttaaaagccttagaaactttcttaaacgcatcttcggaacccggtgctttattcttatcaggatgaactttcaaagacaattt 14228105  T
Q  111 cctataagctttcctaatctcttcaacagaacaactcttctctaaccctaaaatcgaataataatcacttttccctttaatttccctaatcaacttaaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14228106 cctataagctttcctaatctcttcaacagaacaactcttctctaaccctaaaatcgaataataatcacttttccctttaatttccctaatcaacttaaca 14228205  T
Q  211 ttctcctccgtgtaatacttctcaccat 238  Q
    |||||||||||||||| |||||||||||    
T  14228206 ttctcctccgtgtaattcttctcaccat 14228233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 14231619 - 14231844
Alignment:
Q  11 catcatcactcaaacacttaaaagccttagaaactttcttaaacgcatcttcggaacccggtgctttattcttatcaggatgaactttcaaagacaattt 110  Q
    |||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  14231619 catcatcactcaaacactgaaaagcattagaaactttcttaaatgcgtcttccgaacccggtgctttattcttatcaggatgaactttcaaagataattt 14231718  T
Q  111 cctataagctttcctaatctcttcaacagaacaactcttctctaaccctaaaatcgaataataatcacttttccctttaatttccctaatcaacttaaca 210  Q
    | |||||||||| ||||||||||||| ||||||||||||||||||||||||||||  ||| ||||||  || || |  |||||| |||||||| ||||||    
T  14231719 cttataagcttttctaatctcttcaatagaacaactcttctctaaccctaaaatcatatagtaatcatcttcccataaaatttctctaatcaaattaaca 14231818  T
Q  211 ttctcctccgtgtaatacttctcacc 236  Q
    ||||  ||| |||||| ||| |||||    
T  14231819 ttcttttccatgtaattcttttcacc 14231844  T

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