View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13441_low_26 (Length: 237)
Name: NF13441_low_26
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26249675 - 26249896
Alignment:
| Q |
1 |
gaaatagagtttggcaaagaga-ctaaacataaaataaaattatattcctttctagcagataagactgaatacatcatatgatcatacacaaccttatat |
99 |
Q |
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| T |
26249675 |
gaaatagagtttggcaaagagagctaaacataaaataaaattatattcctttctagcagataagactgaatacatcatatgatcatacacaaccttatat |
26249774 |
T |
|
| Q |
100 |
tccagaaattcatatataaannnnnnnaataaaagaaattataattaaacatgaaaataaaagtaaaagttctcttagtagagaaaatttactataccat |
199 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
26249775 |
tccagaaattcatatataaacccccccaataaaagaaataataattaaacatgaaaataatagtaaaagttctcttagtagagaacaattactataccat |
26249874 |
T |
|
| Q |
200 |
tgtcctagatagaatagaaaat |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
26249875 |
tgtcctagatagaatagaaaat |
26249896 |
T |
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