View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13441_low_3 (Length: 712)
Name: NF13441_low_3
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 43042707 - 43042383
Alignment:
| Q |
18 |
ttcatttcaaaaacaacttcttagcataaattagagcagcttcaaaacctttttccctatatttttaaaaaatgcaactaggtcaacattgatacgagta |
117 |
Q |
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| T |
43042707 |
ttcatttcaaaaacaacttcttagcataaattagagcagcttcaaaacctttttccctatatttttaaaaaatgcaactaggtcaacattgatacgagta |
43042608 |
T |
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| Q |
118 |
ttcttagtttgaaaattcttcctaattgaatttactgcaaacaatatttcataccaaataatcatgcctnnnnnnncctcaaaatattcaagctcacaag |
217 |
Q |
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| T |
43042607 |
ttcttagtttgaaaattcttcctaattgaatttactgcaaacaatatctcataccaaataatcatgcctaaaaaaacctcaaaatattcaagctcacaag |
43042508 |
T |
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| Q |
218 |
tggataaaaacttcaatttttattttatgttcgtcgctaacttcacctaatttccataaagcatcttatacctgtaaaatttacaatcgtagagatttta |
317 |
Q |
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| T |
43042507 |
tggataaaaacttcaatttttattttatgttcgtcgctaacttcacctaatttccataaagcatcttatacctgtaaaatttacaatcatagagatttta |
43042408 |
T |
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| Q |
318 |
ccctttcaacaccattttctcaatg |
342 |
Q |
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| T |
43042407 |
cactttcaacaccattttctcaatg |
43042383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 415 - 712
Target Start/End: Complemental strand, 43042273 - 43041977
Alignment:
| Q |
415 |
ttactgacctaatagttgaggcgaccctaattgcgatcctacacaacttatgattcgtcttcgtagttacacataaaagatattcgtttagtttacggca |
514 |
Q |
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| T |
43042273 |
ttactaacctaatagttgaggcgaccctgattgcgatcctacacaacttatgattcgtcttcatagttacacacaaaagatattcgtttagtttacggca |
43042174 |
T |
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| Q |
515 |
cattgtgnnnnnnnnnn--atattcacattgtatatttttatattatgacaaaatactcatctccttataattcatgnnnnnnnaacatacaaaagggtt |
612 |
Q |
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| T |
43042173 |
cattgtgtattttttttggatattcacattgtatatttttatattatgacaaaatactcatctccttataattcatgtttttttaacatacaaaagggtt |
43042074 |
T |
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| Q |
613 |
aattctgtacttcaaagttcacaacagttcacatagaagaaacaaggtcgcgaagaagttctactacaacattcacactattggatcttctcatcacttt |
712 |
Q |
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| T |
43042073 |
aattctgtacttcaaagttcaca---gttcacatagaagaaacaaggtcacgaagaagttctactacaacattcacactattggatcttctcatcacttt |
43041977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 101 - 283
Target Start/End: Original strand, 9643560 - 9643746
Alignment:
| Q |
101 |
caacattgatacgagtattcttagtttgaaaattcttcctaattgaatttactgcaaacaatatttcataccaaataatcatgcctnnnnnnncctcaaa |
200 |
Q |
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| T |
9643560 |
caacattggtacgcgtattctctgattgaaactttttactaattgaatttactgcaaataa-atctcataccaaatagttatacctaagaaaatctcaaa |
9643658 |
T |
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| Q |
201 |
atattcaagctcacaagtggataaa-----aacttcaatttttattttatgttcgtcgctaacttcacctaatttccataaagcatct |
283 |
Q |
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| T |
9643659 |
attttcaatttcacaagttgataaacattcaacttcactttttattttatgtttgtcgttaacttcgcctaatttcaataaagcatct |
9643746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 26219284 - 26219202
Alignment:
| Q |
102 |
aacattgatacgagtattct--tagtttgaaaattcttcctaattgaatttactgcaaacaatatttcataccaaataatcat |
182 |
Q |
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| T |
26219284 |
aacattgatacgcgtattctcttagattgaaattttttactaattgaatttattgcaaacaatatctcataccaaatagtcat |
26219202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 34568060 - 34568011
Alignment:
| Q |
234 |
tttttattttatgttcgtcgctaacttcacctaatttccataaagcatct |
283 |
Q |
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| T |
34568060 |
tttttattttatgtttgtagctaactttacctaattttcataaagcatct |
34568011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 34568160 - 34568117
Alignment:
| Q |
139 |
ctaattgaatttactgcaaacaatatttcataccaaataatcat |
182 |
Q |
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| T |
34568160 |
ctaattgaatttattgcaaacaatatctcataccaaatagtcat |
34568117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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