View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_high_10 (Length: 280)
Name: NF13442_high_10
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 7346473 - 7346714
Alignment:
| Q |
11 |
cagagatgtgaaggtattagataagtgacgttaaaaaattcgccggaaccaccacccccaacgactgattccgccgtaaacgtccatcatttcccgtcga |
110 |
Q |
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| T |
7346473 |
cagagatgtgaaggtattagataagtgacgttaaaaaattcgccggaaccaccacctccaacgactgattccgccgtaaacgtccatcatttcccgtcga |
7346572 |
T |
|
| Q |
111 |
ctctgccgtcgcatnnnnnnngcaacaatctcatttcgattgttcttcatttcgattttgaatttcttcctgatgattttcaatctcacttctacaactt |
210 |
Q |
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| T |
7346573 |
ctctgccgttgcataaaaaaagcaacaatctcatttcgattgttcttcatttcgattttgaatttcttcctgatgattttcaatctcacttctacaactt |
7346672 |
T |
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| Q |
211 |
gaagaatcttgaatctccaatttgtaaaaaattgaaaataat |
252 |
Q |
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| T |
7346673 |
gaagaatcttgaatctccaatttgtaaaaaattgaaaataat |
7346714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 53401037 - 53400823
Alignment:
| Q |
11 |
cagagatgtgaaggtattagataagtgacgttaaaaaattcgccggaaccaccacccccaacgactgattccgccgtaaacgtccatcatttcccgtcga |
110 |
Q |
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| T |
53401037 |
cagagatgtgaaggtattagataagtgacgttaaaaaattcgccggaaccaccacctccaacgactgattccgccgtaaacgtccatcatttcccgtcga |
53400938 |
T |
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| Q |
111 |
ctctgccgtcgcatnnnnnnngcaacaatctcatttcgattgttcttcatttcgattttgaatttcttcctgatgattttcaatctcacttctacaactt |
210 |
Q |
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| T |
53400937 |
ctccgtcgtcgca---ccaaagcaacaatc----------------tcatttcgattttgaatt------taatgattttcaatctcacttctacaactt |
53400863 |
T |
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| Q |
211 |
gaagaatcttgaatctccaatttgtaaaaaattgaaaata |
250 |
Q |
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| T |
53400862 |
gaagaatcttgaatctccaatttgtcaaaaattgaaaata |
53400823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 9962960 - 9963082
Alignment:
| Q |
132 |
gcaacaatctc--atttcgattgttcttcatttcgattttgaatttcttcctgatgattttcaatctcacttctacaacttgaagaatcttgaatctcca |
229 |
Q |
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||||||||||| |||| ||||||||||| || ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9962960 |
gcaacaatctccgattttgattgttcttcgttccgattctgaatttcttcctgaagattttcaatctcatttctacaacttgaagaatcttgaatctcca |
9963059 |
T |
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| Q |
230 |
atttgtaaaaaattgaaaataat |
252 |
Q |
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|||| | |||||||||| ||||| |
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| T |
9963060 |
atttctcaaaaattgaagataat |
9963082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 9962845 - 9962900
Alignment:
| Q |
51 |
cgccggaaccaccacccccaacgactgattccgccgtaaacgtccatcatttcccg |
106 |
Q |
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| T |
9962845 |
cgccggaaccaccacctccatcgactgattccgccgtagacggccatcatttcccg |
9962900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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