View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13442_high_11 (Length: 278)

Name: NF13442_high_11
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13442_high_11
NF13442_high_11
[»] chr2 (8 HSPs)
chr2 (119-221)||(38491723-38491823)
chr2 (1-46)||(14186525-14186570)
chr2 (1-46)||(40277375-40277420)
chr2 (1-45)||(29846439-29846483)
chr2 (1-46)||(14942131-14942176)
chr2 (1-46)||(19181544-19181589)
chr2 (1-46)||(42769845-42769890)
chr2 (1-46)||(3597954-3597999)
[»] chr3 (10 HSPs)
chr3 (1-48)||(23467581-23467628)
chr3 (1-46)||(5391453-5391498)
chr3 (1-46)||(40846004-40846049)
chr3 (1-46)||(44995056-44995101)
chr3 (1-45)||(13856096-13856140)
chr3 (1-45)||(21853194-21853238)
chr3 (1-46)||(32352843-32352888)
chr3 (1-46)||(8950591-8950636)
chr3 (1-45)||(19649461-19649506)
chr3 (1-45)||(43347424-43347468)
[»] chr8 (8 HSPs)
chr8 (1-47)||(33934456-33934502)
chr8 (1-46)||(21525354-21525399)
chr8 (1-46)||(26021391-26021436)
chr8 (1-45)||(22324593-22324637)
chr8 (1-46)||(35806790-35806835)
chr8 (1-42)||(42013872-42013913)
chr8 (1-46)||(19334778-19334823)
chr8 (1-46)||(42072424-42072469)
[»] chr7 (12 HSPs)
chr7 (1-47)||(24320526-24320572)
chr7 (1-46)||(29556026-29556071)
chr7 (1-46)||(44164830-44164875)
chr7 (1-45)||(34707113-34707157)
chr7 (1-46)||(10576669-10576714)
chr7 (1-46)||(32876617-32876662)
chr7 (1-46)||(29238230-29238275)
chr7 (1-34)||(34259526-34259559)
chr7 (1-45)||(33057745-33057789)
chr7 (1-45)||(10334173-10334218)
chr7 (1-45)||(17303203-17303248)
chr7 (1-45)||(19334649-19334693)
[»] chr6 (5 HSPs)
chr6 (1-46)||(11084606-11084651)
chr6 (1-46)||(14309885-14309930)
chr6 (1-46)||(24694738-24694783)
chr6 (1-45)||(9231941-9231985)
chr6 (1-47)||(13627535-13627581)
[»] chr4 (12 HSPs)
chr4 (1-46)||(25954746-25954791)
chr4 (1-46)||(37801351-37801396)
chr4 (1-46)||(52632514-52632559)
chr4 (1-45)||(16338331-16338375)
chr4 (1-47)||(34240988-34241034)
chr4 (1-46)||(1535767-1535812)
chr4 (1-46)||(49284353-49284398)
chr4 (1-46)||(35018932-35018977)
chr4 (1-42)||(46583628-46583669)
chr4 (1-45)||(17888638-17888683)
chr4 (1-45)||(31377385-31377430)
chr4 (1-46)||(36012272-36012317)
[»] chr1 (11 HSPs)
chr1 (1-46)||(3346782-3346827)
chr1 (1-46)||(7742866-7742911)
chr1 (1-46)||(10156103-10156148)
chr1 (1-46)||(42517385-42517430)
chr1 (1-46)||(48392493-48392538)
chr1 (1-46)||(49902464-49902509)
chr1 (1-45)||(23908282-23908326)
chr1 (1-42)||(5974988-5975029)
chr1 (1-46)||(29149635-29149680)
chr1 (1-46)||(47022698-47022743)
chr1 (1-45)||(10907736-10907781)
[»] scaffold0079 (1 HSPs)
scaffold0079 (1-45)||(54485-54529)
[»] chr5 (8 HSPs)
chr5 (1-45)||(16618657-16618701)
chr5 (1-47)||(6257497-6257543)
chr5 (1-46)||(23218481-23218526)
chr5 (1-46)||(37169120-37169165)
chr5 (1-45)||(38397595-38397639)
chr5 (1-42)||(15631613-15631654)
chr5 (1-46)||(39862574-39862619)
chr5 (1-45)||(25560415-25560460)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 38491723 - 38491823
Alignment:
Q  119 aaatgtatgaagtgtgaacaaaaagggttgggggatctatcgagtttttgactttgaacagtagcatatccatgttgatactggcacgtatgactttgat 218  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  38491723 aaatgtatgaagtgtgaacaaaaagggttggg--atttatcgagtttttgactttgaaccgtagcatatccatgttgatactggcacgtatgactttaat 38491820  T
Q  219 aat 221  Q
    |||    
T  38491821 aat 38491823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14186525 - 14186570
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14186525 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 14186570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40277375 - 40277420
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40277375 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29846483 - 29846439
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29846483 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 29846439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14942131 - 14942176
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  14942131 tatttgcttgcaatttcttatgtacgccttataaatgtgttgcaaa 14942176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19181589 - 19181544
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  19181589 tatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 19181544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42769845 - 42769890
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  42769845 tatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 42769890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3597954 - 3597999
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  3597954 tatttacttgcaatttcttacgtacgccctataaatgtattgcaaa 3597999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23467581 - 23467628
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaaa 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467581 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaaa 23467628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5391498 - 5391453
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5391498 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 5391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40846004 - 40846049
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40846004 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40846049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44995056 - 44995101
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44995056 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44995101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13856140 - 13856096
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13856140 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 13856096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21853238 - 21853194
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21853238 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 21853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32352888 - 32352843
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  32352888 tatttgcttacaatttcttatgtacgccctataaatgtgttgcaaa 32352843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8950591 - 8950636
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||    
T  8950591 tatttgcttgaaatttcttatgtacgccctataaatatgttgcaaa 8950636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19649461 - 19649506
Alignment:
Q  1 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 45  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  19649461 tatttgcttgcaatttcttatgtaattccctataaatgtgttgcaa 19649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43347424 - 43347468
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    ||||||||||||||||||||||||  |||||||| | ||||||||    
T  43347424 tatttgcttgcaatttcttatgtaaaccctataattatgttgcaa 43347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33934456 - 33934502
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33934456 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 33934502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21525399 - 21525354
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21525399 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 21525354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26021436 - 26021391
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26021436 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 26021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22324637 - 22324593
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22324637 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 22324593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35806835 - 35806790
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  35806835 tatttgcttgcaatttcttatgtacaccctataaatgtgttgcaaa 35806790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42013913 - 42013872
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttg 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42013913 tatttgcttgcaatttcttatgtacgccctataaatgtgttg 42013872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19334823 - 19334778
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||| ||||||||||||||  |||||||||| |||||||||    
T  19334823 tatttgcttacaatttcttatgtaacccctataaatatgttgcaaa 19334778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42072469 - 42072424
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||  |  |||||||||||||||||    
T  42072469 tatttgcttgcaatttcttatgtaaacaatataaatgtgttgcaaa 42072424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24320526 - 24320572
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24320526 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 24320572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29556026 - 29556071
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29556026 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 29556071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44164830 - 44164875
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44164830 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44164875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34707157 - 34707113
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34707157 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 34707113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10576714 - 10576669
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  10576714 tatttgcttgcaatttcttatgtacgccctataaatgtattgcaaa 10576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32876617 - 32876662
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  32876617 tatttgcttgcaatttcttatgtacgctctataaatgtgttgcaaa 32876662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29238230 - 29238275
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  29238230 tatttgcttacaatttcttatgtaggccctataaatgtgttgcaaa 29238275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34259559 - 34259526
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  34259559 tatttgcttgcaatttcttatgtacgccctataa 34259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33057745 - 33057789
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    ||||||||||||||||||||||||   ||||||||||||||||||    
T  33057745 tatttgcttgcaatttcttatgtaaatcctataaatgtgttgcaa 33057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10334218 - 10334173
Alignment:
Q  1 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 45  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  10334218 tatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17303203 - 17303248
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 45  Q
    ||||||||||||||||||||||||  || |||||||||||||||||    
T  17303203 tatttgcttgcaatttcttatgtaaaccactataaatgtgttgcaa 17303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19334649 - 19334693
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    ||||||||||||||||||||| ||  |||||||||| ||||||||    
T  19334649 tatttgcttgcaatttcttatataaaccctataaatttgttgcaa 19334693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11084651 - 11084606
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11084651 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 11084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14309885 - 14309930
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14309885 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 14309930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24694738 - 24694783
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24694738 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 24694783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9231941 - 9231985
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  9231941 tatttgcttgcaatttcttatgtatgccctataaatgtgttgcaa 9231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13627581 - 13627535
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 47  Q
    |||||||||| | ||||||||||||| ||||||||| ||||||||||    
T  13627581 tatttgcttgtactttcttatgtacgtcctataaatatgttgcaaaa 13627535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25954791 - 25954746
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  25954791 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 25954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37801351 - 37801396
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37801351 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 37801396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 52632559 - 52632514
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  52632559 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 52632514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16338331 - 16338375
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16338331 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34241034 - 34240988
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  34241034 tatttgcttgcaatttcttatgtacgccctataaatgtgttgtaaaa 34240988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1535812 - 1535767
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  1535812 tatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 1535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49284398 - 49284353
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  49284398 tatttgtttgcaatttcttatgtacgccctataaatgtgttgcaaa 49284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35018977 - 35018932
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||| || |||||||||||||||||    
T  35018977 tatttgcttgcaatttcttatgtacaccttataaatgtgttgcaaa 35018932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 46583628 - 46583669
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttg 42  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  46583628 tatttgcttgcaatttcttatgtacgccatataaatgtgttg 46583669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17888638 - 17888683
Alignment:
Q  1 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 45  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  17888638 tatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31377430 - 31377385
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 45  Q
    ||||||||||||||||||||||||  || |||||||||||||||||    
T  31377430 tatttgcttgcaatttcttatgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36012272 - 36012317
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    |||||||||||||||| ||||||| | | |||||||||||||||||    
T  36012272 tatttgcttgcaattttttatgtatgtcatataaatgtgttgcaaa 36012317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3346827 - 3346782
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3346827 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 3346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7742866 - 7742911
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7742866 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 7742911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10156103 - 10156148
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10156103 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 10156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42517385 - 42517430
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  42517385 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 42517430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48392493 - 48392538
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48392493 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 48392538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49902509 - 49902464
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49902509 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 49902464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23908326 - 23908282
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23908326 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 23908282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5975029 - 5974988
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttg 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5975029 tatttgcttgcaatttcttatgtacgccctataaatgtgttg 5974988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29149635 - 29149680
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  29149635 tatttgcttgcaatttcttatgtacgccctatacatgtgttgcaaa 29149680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 47022743 - 47022698
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||||    
T  47022743 tatttacttgtaatttcttatgtacgccctataaatatgttgcaaa 47022698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10907736 - 10907781
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 45  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||    
T  10907736 tatttgcttgcaatttcttatgtagacacctataaatgtgttgcaa 10907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54529 - 54485
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  54529 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 54485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16618657 - 16618701
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16618657 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6257497 - 6257543
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 47  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  6257497 tatttgcttgcaatttcttatatacgccctataaatgtgttgcaaaa 6257543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23218526 - 23218481
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  23218526 tatttgcttgcaatttcttatgtactccctataaatgtgttgcaaa 23218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37169120 - 37169165
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  37169120 tatttgcttgcaatttcttatgtacgccctataaatgtgtggcaaa 37169165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38397639 - 38397595
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 45  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  38397639 tatttgcttgcaatttcttatgtacgtcctataaatgtgttgcaa 38397595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15631654 - 15631613
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttg 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  15631654 tatttgcttgcaatttcttatgtacgccctataaatgcgttg 15631613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39862574 - 39862619
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 46  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  39862574 tatttgcttgcaatttcttatatacgccctaaaaatgtgttgcaaa 39862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25560415 - 25560460
Alignment:
Q  1 tatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 45  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||    
T  25560415 tatttgcttgcaatttcttatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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