View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_high_7 (Length: 400)
Name: NF13442_high_7
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 74 - 384
Target Start/End: Original strand, 25293942 - 25294252
Alignment:
| Q |
74 |
agctaccaaaccccaccatcaccgaccgcatcttcatggacttcagcctctgccccaactattacctcccaaatcgcaccctcggcgacaccatctccac |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25293942 |
agctaccaaaccccaccatcaccgaccgcatcttcatggacttcagcctctgccccaactattacctcccaaatcgcaccctcggcgacaccatctccac |
25294041 |
T |
|
| Q |
174 |
cctatgctccgaatccaccttactcggtcgcgtcattctcggcctctacggtaaccttgttccacgcacagtctcaaatttcaaatcactttgcatttcc |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25294042 |
cctatgctccgaatccaccttactcggtcgcgtcattctcggcctctacggtaacctcgttccacgcacagtctcaaatttcaaatcactttgtatttcc |
25294141 |
T |
|
| Q |
274 |
tctcctaattcatcatcttcttacaagaacacattcgtccacaaggttatacaaggtcagtactttcttgctggacgtcagggtcgtcctgagaaaggcg |
373 |
Q |
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|||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25294142 |
tctcctaattcatcttcctcctacaagaacacattcgttcacaaggttatacaaggtcagtactttcttgctggacgtcagggtcgtcctgaaaaaggcg |
25294241 |
T |
|
| Q |
374 |
aggtccgccct |
384 |
Q |
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||||||||||| |
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| T |
25294242 |
aggtccgccct |
25294252 |
T |
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