View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13442_high_8 (Length: 386)
Name: NF13442_high_8
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 16960698 - 16960327
Alignment:
| Q |
1 |
tcatcatgcataggagttgttggattattgattgttggagttgttatcttggttgtaaatcaggttcatcgaaaaaatgctacgaaagaaacttcattgt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16960698 |
tcatcaagcataggagttgttggattattgattgttggagttgttatcttggttgtaaatcaggttcatcgaaaaaatgctacgaaagaaacttcattgt |
16960599 |
T |
|
| Q |
101 |
caacattggaacatgttattattagtcagataaataatgaagagaaagtgaaaagtactgcaaggtctatagtggagtatttcagcagaagggttcctga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16960598 |
caacattggaacatgttattattagtcagataaataatgaagagaaagtgaaaagtactgcaaggtctatagtggagtatttcagcagatgggttcctga |
16960499 |
T |
|
| Q |
201 |
taaaaatgtcatgaaaaatctgacaagatccataaaggaacatataatgagccgattcaataacagacgccttgtgagggcgccttcgaggtccataata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16960498 |
taaaaatgtcatgaaaaatctgacaagatccataaagaaacatataatgagccgattcaataacagacgccttgtgagggcgccttcaaggtccataata |
16960399 |
T |
|
| Q |
301 |
gaacatgtatcatcagtaaacactgcaaaactactcactgatgcaagtaaatccacaaatcctttgctttgt |
372 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16960398 |
gaacatgtatcatcattaaacactgcaaaactactcactgatgcaagtaaatccacaaatcctttgctttgt |
16960327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University