View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_high_9 (Length: 373)
Name: NF13442_high_9
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 355
Target Start/End: Complemental strand, 42929661 - 42929315
Alignment:
| Q |
9 |
gtcgaagaatatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagct |
108 |
Q |
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| T |
42929661 |
gtcgaagcaaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagct |
42929562 |
T |
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| Q |
109 |
cttgaagaccttcccaatctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929561 |
cttgaagaccttcccaatctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaac |
42929462 |
T |
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| Q |
209 |
tacactatctttgaatggcaagctttgagtttcaccacctccaattgcagcagctttattattaacctctaaaatggagttggtctcatctggctcaaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42929461 |
tacactatctttgaatggcaagctttgagtttcaccacctccaattgcagcagctttattattaacctctaagatggagttggtctcatctggctcaaag |
42929362 |
T |
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| Q |
309 |
aaaaaccgatcagaagataatccacgaatcacagtttcgatcgaatc |
355 |
Q |
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| T |
42929361 |
aaaaaccgatcagaagataatccacgaatcacagtttcgatcgaatc |
42929315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 50463289 - 50463383
Alignment:
| Q |
36 |
aaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatcttt |
130 |
Q |
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|||||||||||||||||||||||| | |||||||| |||| |||| || ||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
50463289 |
aaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatcttt |
50463383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 25531024 - 25531099
Alignment:
| Q |
33 |
aataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagct |
108 |
Q |
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|||||||||| ||||||| ||| |||| | |||||||| |||||||||| || | ||||||||||||||||||| |
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| T |
25531024 |
aataaatcaaaaaaagcatcaataataaatccatgatttcttttctcattaacttcaaaataccaactcaaaagct |
25531099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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