View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_low_1 (Length: 777)
Name: NF13442_low_1
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 7e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 591 - 761
Target Start/End: Complemental strand, 11765401 - 11765231
Alignment:
| Q |
591 |
tattgctttctgatgaactggttcctcttgtcattgccattgtttgtttgcctatttactcacaaaatatcatccaagcaataccttaatttaacacttt |
690 |
Q |
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| T |
11765401 |
tattgttttctgatgaactggttcctcttgtcattgccattgtttgtttgcctatttactcacaaaatatcatccaagcaataccttaatttaacatttt |
11765302 |
T |
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| Q |
691 |
gtgtgcaggcattagtggaccatactgatcaaagagctgaagccattccctgctccacagctacaccaaat |
761 |
Q |
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| T |
11765301 |
gtgtccaggcatcagtggaccatactgatcaaagagctgaagccattccctgctccacagctacaccaaat |
11765231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 108 - 298
Target Start/End: Complemental strand, 11767007 - 11766817
Alignment:
| Q |
108 |
aaaattagaaaatgacagacatatacagtacaacacaacgctgttct-----gttccctttaaaattacttaaccacccctatcaaattccaattcttca |
202 |
Q |
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| T |
11767007 |
aaaataagaaaatgacagacatat----tacaacacaacgctgttctgttctgttccctttaaaattacttaaccacccctgtcaaa-tccaattgttca |
11766913 |
T |
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| Q |
203 |
aaaaacacacctttcattgtgacaaaattcattgtatcgaatcgtatcaacgaaaatgtcggtgagtttcatttccctctgctcttctcatttctt |
298 |
Q |
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| T |
11766912 |
aaaaactcaactttcgttgtgacaaaattcattgtatcgaatcgtatcaacgaaaatgtcggtgagtttcattctcctctgctattctcatttctt |
11766817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 11766655 - 11766572
Alignment:
| Q |
404 |
ttcagaactgtgatggagctataacttgattgattttattcattctatgatttgatgtagttgtatatattaatgctgttcttg |
487 |
Q |
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| T |
11766655 |
ttcagaactgtgatggagctatattttgattgattttaatcattttataatacgatgtagttgtatatattaatgctcttcttg |
11766572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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