View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_low_13 (Length: 258)
Name: NF13442_low_13
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_low_13 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 24640366 - 24640617
Alignment:
| Q |
7 |
aatattgatcctaagaaaactatagttttcttcaggggctattccccttctcatttcaggtaaataaacatttagcttgtttaaacctagtgcctaactc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24640366 |
aatattgatcctaagaaaactatagttttcttcaggggctattccccttctcatttcaggtaaataaacatttagcttgtttaaacctagtgcctaactc |
24640465 |
T |
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| Q |
107 |
ccatacccaacagatatatcatgtttttcttttaaccgctgtannnnnnnncctagtccttataaatatatcacttttttgtttagtcattgttttagtt |
206 |
Q |
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| T |
24640466 |
ccatacccaacagatatatcatgtttttcttttaaccgctgtattttttttcctagtccttataaatatatcacttttttgtttagtcattgttttagtt |
24640565 |
T |
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| Q |
207 |
tctacaaatttgttcatattagaattgatatatgtaataagtagaatattca |
258 |
Q |
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| T |
24640566 |
tctacaaatttgttcatattagaattgatatatgtaataagtagaatattca |
24640617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 52490401 - 52490150
Alignment:
| Q |
7 |
aatattgatcctaagaaaactatagttttcttcaggggctattccccttctcatttcaggtaaataaacatttagcttgtttaaacctagtgcctaactc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52490401 |
aatattgatcctaagaaaactatagttttcttcaggggctattccccttctcatttcaggtaaataaacatttagcttgtttaaacctagtgcctaactc |
52490302 |
T |
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| Q |
107 |
ccatacccaacagatatatcatgtttttcttttaaccgctgtannnnnnnncctagtccttataaatatatcacttttttgtttagtcattgttttagtt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52490301 |
ccatacccaacagatatatcatgtttttcttttaaccgctgtattttttttcctagtccttataaatatatcacttttttgtttagtcattgttttagtt |
52490202 |
T |
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| Q |
207 |
tctacaaatttgttcatattagaattgatatatgtaataagtagaatattca |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52490201 |
tctacaaatttgttcatattagaattgatatatgtaataagtagaatattca |
52490150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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