View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_low_14 (Length: 239)
Name: NF13442_low_14
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_low_14 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 24640962 - 24640736
Alignment:
| Q |
13 |
tcatcattggaggactttctgacaaatctgtagactcagttttcattggttctgtctcactctcacaacgaccaccagaatcccactacccacccctgta |
112 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24640962 |
tcatcattggaggattttctgacaaatctgtagactcagttttcattggttctgtctcactctcacaacgaccaccagaatcccactccccacccctgta |
24640863 |
T |
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| Q |
113 |
gcagaaacaaggagggattatacgaaatcctaaagccagccaatgttcaaatatatttttattgtccaacgatgtactgtattttgtatttagctcttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
24640862 |
gcagaaacaaggagggattatacgaaatcctaaagccagcaaatgttcaaatatatttttattctccaaagatgtactgtattttgtatttagcccttgt |
24640763 |
T |
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| Q |
213 |
aattattagtcattacaatcataaact |
239 |
Q |
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||||||||||||||||||||||||||| |
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| T |
24640762 |
aattattagtcattacaatcataaact |
24640736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 52489805 - 52490031
Alignment:
| Q |
13 |
tcatcattggaggactttctgacaaatctgtagactcagttttcattggttctgtctcactctcacaacgaccaccagaatcccactacccacccctgta |
112 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52489805 |
tcatcattggaggattttctgacaaatctgtagactcagttttcattggttctgtctcactctcacaacgaccaccagaatcccactccccacccctgta |
52489904 |
T |
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| Q |
113 |
gcagaaacaaggagggattatacgaaatcctaaagccagccaatgttcaaatatatttttattgtccaacgatgtactgtattttgtatttagctcttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
52489905 |
gcagaaacaaggagggattatacgaaatcctaaagccagcaaatgttcaaatatatttttattctccaaagatgtactgtattttgtatttagcccttgt |
52490004 |
T |
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| Q |
213 |
aattattagtcattacaatcataaact |
239 |
Q |
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||||||||||||||||||||||||||| |
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| T |
52490005 |
aattattagtcattacaatcataaact |
52490031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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