View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_low_15 (Length: 209)
Name: NF13442_low_15
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 39446184 - 39446352
Alignment:
| Q |
25 |
gtatttaccctctagtttcaacgagaagggctctcgtaatcctgaattcggttgggagataagtaaaatttgaccaaaaaatatttcacttaagaattga |
124 |
Q |
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| T |
39446184 |
gtatttaccctctggtttcaacgagaagggctctcgtaatcctgaattcggttgggagagaaataaaatttggccaacaaatgtttcactttagaatcga |
39446283 |
T |
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| Q |
125 |
acccaagttctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggttat |
193 |
Q |
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| T |
39446284 |
atccaaattctcctaaaaaatttgttatcggtggagttcatcaacaattgaggtcaaatgtttggttat |
39446352 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 39467630 - 39467689
Alignment:
| Q |
134 |
ctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggttat |
193 |
Q |
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| T |
39467630 |
ctcctaaaaaaatcgtccttggtggagttcatcaacaattaatctcaaatgtttggttat |
39467689 |
T |
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