View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_low_2 (Length: 771)
Name: NF13442_low_2
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 228 - 748
Target Start/End: Original strand, 41095568 - 41096087
Alignment:
| Q |
228 |
tgacaaggcagagaaaagctcaacaccaactgccactgcctctccaggttctgcagaaaataagcctactacacctacaaaagatgatactgctgctgct |
327 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41095568 |
tgacaaggcagagaaaagctcaacaccaactgctactgcctctccaggttctgcagaaaataagcctactacacctacaaaagatgatgctgctgctgct |
41095667 |
T |
|
| Q |
328 |
gcttctgctaatggtgaacaacaagatcctccagcagttgagggtgagcaagttgctagttctgagccaccagctgctcagtgatgaggacaatatgtta |
427 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41095668 |
gcttctgttaatggtgaacaacaagatcctccagcagttgagggtgagcaagttgctagttctgagccaccagctgctcagtgatgaggacaatatgtta |
41095767 |
T |
|
| Q |
428 |
ttcttttttcttggcaattcttttagatatatacctannnnnnngagctttctattcttacattcattaagaataagtgatggacatagtagaaagatac |
527 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41095768 |
ttcttttttcttggcaattcttttagatatatacctatttttttgagctttctattcttacattcattaagaataagtgatggacatagtagaaagatac |
41095867 |
T |
|
| Q |
528 |
tttggactttgcagcaccccctgttgagagcatcagtctaaactattgtcctagttttgtaggttttagtgcaaatctttttgttgttattttactttgg |
627 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41095868 |
tttggactttgcagca-cccctgttgagagcatcagtctaaactattgtcctagttttgtaggttttagtgcaaatctttttgttgttattttactttgg |
41095966 |
T |
|
| Q |
628 |
aattccttatcaaagtacaa-nnnnnnnnccactctcttatcttttgcatatttatttcatttaactctcagcaagaagcacctaacattgctttttgtc |
726 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
41095967 |
aattccttatcaaagtacaatttttttttccactctcttatcttttgcatatttatttcatttaactctcagcaagaagcacccaacattgc-ttttgtc |
41096065 |
T |
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| Q |
727 |
aattctgaggtattgatagttc |
748 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41096066 |
aattctgaggtattgatagttc |
41096087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 41095357 - 41095497
Alignment:
| Q |
17 |
aaaaagaagccgacaataaaccttcggttcatgttattcaaggtccaaagcctgggaaacctaccgatctttctagaatgcgccaaatgattttgaagct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41095357 |
aaaaagaagccgacaataaaccttcggttcatgttattcaaggtccaaagcctgggaaacctaccgatctttctagaatgcgccaaatgattttgaagct |
41095456 |
T |
|
| Q |
117 |
taaacagaatcccccgactcatatgatgcctcctcccccac |
157 |
Q |
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| T |
41095457 |
taaacagaatcccccgactcatatgatgcctcctcccccac |
41095497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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