View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_low_3 (Length: 609)
Name: NF13442_low_3
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Original strand, 26454731 - 26455329
Alignment:
| Q |
1 |
attatcattatgtcaatactttcatcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgg |
100 |
Q |
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| T |
26454731 |
attatcattatgtcaatactttcatcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgg |
26454830 |
T |
|
| Q |
101 |
gattttggttgacaaatggccaatttgtatctcattcttgatacaagcttctttgttcgtttgagttgtttcttggctcaccttcagctccttaagattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454831 |
gattttggttgacaaatggccaatttgtatctcattcttgatacaagcttctttgttcttttgagttgtttcttggctcaccttcagctccttaagattg |
26454930 |
T |
|
| Q |
201 |
ttttgtgtggatttcatgaacttgcccataatctcatctaacttaaagggtttcctttaatgctagttgggtggaggtacttgtgtttgatttagaaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454931 |
ttttgtgtggatttcatgaacttgcccataatctcatctaacttaaagggtttcctttaatgctagttgggtggaggtacttgtgtttgatttagaaagt |
26455030 |
T |
|
| Q |
301 |
tgttgcaccacttcatattatgatgattttttcttgcattaatgtaggtgttaaaaaatgggttgcctctcttgtaatcaccacgtagttggcttcctca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455031 |
tgttgcaccacttcatattatgatgattttttcttgcattaatgtaggtgttaaaaaatgggttgcctctcttgtaatcaccacgtagttggcttcctca |
26455130 |
T |
|
| Q |
401 |
gttgtatcttcaacaatgccttccttgttctatttcccataattacacttccatacttttgtttgttgtgacttggaacaatggcttcctcagttgcatc |
500 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455131 |
gttgtatcttcaacaatgccttacttgttctatttcccataattacacttccatacttttgtttgttgtgacttggaacaatggcttcctcagttgcatc |
26455230 |
T |
|
| Q |
501 |
ttcagtttaacttcttggtgagagtcacgaattgggaagccatagggttgtggttgaccataaaagttctataggcatccagctccaaaacttcctatg |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455231 |
ttcagtttaacttcttggtgagagtcacgaattgggaagccatagggttgtggttgaccataaaagttctataggcatccagctccaaaacttcctatg |
26455329 |
T |
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