View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13442_low_4 (Length: 521)
Name: NF13442_low_4
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 38 - 489
Target Start/End: Complemental strand, 14484668 - 14484219
Alignment:
| Q |
38 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcattaggacataagtcaaataaaagtattagc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14484668 |
gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaattgcattaggacataagtcaaataaaagtattagc |
14484569 |
T |
|
| Q |
138 |
atgcatataaacagttgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctgtctgttgtaatcc |
237 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14484568 |
atgcatataaacaattgtaggatgtacaccatgttggtttatcaaagatattaaaaaggtattgtttcattgattatata--gtctgtctgttgtaatcc |
14484471 |
T |
|
| Q |
238 |
ttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactcgtggaaatttgaaaatgaaaatggagtttactcagttgtaaacccga |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
14484470 |
ttaaattcaaagagagggttgtggaattagttgttaaaactgcgagttaactcgttgaaatttgaaaatgaaaatggagtttactcggttgtaaacccaa |
14484371 |
T |
|
| Q |
338 |
attttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagatttcaa |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14484370 |
attttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagattttaa |
14484271 |
T |
|
| Q |
438 |
tagaatttttaatctttcattccatctcaaagttcacattctggtctttttc |
489 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14484270 |
tagaattttttatctttcattccatctcaaagttcacattctggtctttttc |
14484219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 11605871 - 11605582
Alignment:
| Q |
1 |
ggacgtccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605871 |
ggacgtccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataatt |
11605772 |
T |
|
| Q |
101 |
aattgcattaggacataagtcaaataaaagtattagcatgcatataaacagttgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605771 |
aattgcattaggacataagtcaaataaaagtattagcatgcatataaacaattgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtatt |
11605672 |
T |
|
| Q |
201 |
gtttcattgattatagtctgtctgtctgttgtaatccttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactc |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605671 |
gtttcattgattatagtctgtctgtctgttgtaatccttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactc |
11605582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 314 - 514
Target Start/End: Complemental strand, 11605591 - 11605391
Alignment:
| Q |
314 |
gagtttactcagttgtaaacccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagattt |
413 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605591 |
gagttaactcagttgtaaacccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagattt |
11605492 |
T |
|
| Q |
414 |
gggtaaactcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttcttctttgtttgtttgattttcttc |
513 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
11605491 |
gggtgaactcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttcttctttgttagtttgattttgttc |
11605392 |
T |
|
| Q |
514 |
g |
514 |
Q |
| |
|
| |
|
|
| T |
11605391 |
g |
11605391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 11621702 - 11621806
Alignment:
| Q |
4 |
cgtccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaat |
103 |
Q |
| |
|
|||||||| ||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||| ||| |||| |
|
|
| T |
11621702 |
cgtccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattaattttgatagtaactaat |
11621801 |
T |
|
| Q |
104 |
tgcat |
108 |
Q |
| |
|
||||| |
|
|
| T |
11621802 |
tgcat |
11621806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 11640207 - 11640283
Alignment:
| Q |
27 |
ttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaatt |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
11640207 |
ttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt |
11640283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 38 - 489
Target Start/End: Original strand, 33735417 - 33735878
Alignment:
| Q |
38 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcattaggacataagtcaaataaaagtattagc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735417 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcattaggacataagtcaaataaaagtattagc |
33735516 |
T |
|
| Q |
138 |
atgcatataaacagttgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctgtctgttgtaatcc |
237 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
33735517 |
atgcatataaacaattgtaggatgtacaccatgttggttaatcaaagatattaaaaaggtattgtttcattgattata--tagtctgtctgttgtattcc |
33735614 |
T |
|
| Q |
238 |
ttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactcgtggaaatttgaaaatgaaaatggagtttactcagttgtaa------ |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33735615 |
ttaaattcaaagagagggttgtggaattagttgttaaaactgcgagttaactcgttgaaatttgaaaatgaaaatggagtttactcggttgtaaactcgg |
33735714 |
T |
|
| Q |
332 |
------acccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgc |
425 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735715 |
ttgtagactcgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgaagtgaactcgacaaactcggatagatttgggtaaactcgc |
33735814 |
T |
|
| Q |
426 |
aatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttc |
489 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735815 |
aatagattttaatagaattttttatctttcattccatctcaaagttcacattctggtctttttc |
33735878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 368 - 489
Target Start/End: Original strand, 22473237 - 22473358
Alignment:
| Q |
368 |
ttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagatttcaatagaatttttaatctttcattccatctcaa |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
22473237 |
ttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaacttgcaatagattttaatagaattttttatctttcattccatctcaa |
22473336 |
T |
|
| Q |
468 |
agttcacattctggtctttttc |
489 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
22473337 |
agttcacattccggtctttttc |
22473358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 25042188 - 25042265
Alignment:
| Q |
147 |
aacagttgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctg |
224 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25042188 |
aacaattgtaggatgtacaccatgttggtttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctg |
25042265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 4197079 - 4197121
Alignment:
| Q |
329 |
taaacccgaattttagtaaatttgaaaatgaaactgagtttac |
371 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4197079 |
taaactcgaattttagtaaacttggaaatgaaactgagtttac |
4197121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University