View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13442_low_6 (Length: 430)
Name: NF13442_low_6
Description: NF13442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13442_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 24 - 356
Target Start/End: Complemental strand, 32067140 - 32066811
Alignment:
| Q |
24 |
attacgcactatcgaattgatcctcacacaatcgtgtaaaaataaaataaatgtgacaacatttcaaggccctccaaatcaactttaaattctatattaa |
123 |
Q |
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| T |
32067140 |
attacgcactctcgaattgatccccacacaatattgtaaaaataaaataaatgtgacaacatttcaaggccctccaaatcaactttaaattctatattaa |
32067041 |
T |
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| Q |
124 |
actttactattttgaagagattaaatagagaacataaaatataatgattacataccattgattgggagggggtgcgtagagactactctttggagaagat |
223 |
Q |
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| T |
32067040 |
actttactattttgaaaagattaaatagagaacataaaatataatgattacataccattgattgggagggggtgtgtcgag---actctttggagaagat |
32066944 |
T |
|
| Q |
224 |
taccgtttgtgtgggagggggagcaaattgatagcctttaggccactataaatgggtttagagggagggtggtggaagattcatggggtgaaaaccggag |
323 |
Q |
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||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32066943 |
taccgtttgtgtgggagggggagcaaattgaaaaccttttggccactataaatgggtttagagggagggtggtggaagattcgtggggtgaaaaccggag |
32066844 |
T |
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| Q |
324 |
gagggaggagagttctcggtaaaatctacatat |
356 |
Q |
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| T |
32066843 |
gagggaggagagttctcggtaaaatctacatat |
32066811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 37987348 - 37987303
Alignment:
| Q |
370 |
tgtctggtaaaccgtggtgttggtttgtgtggtgggggtgatgatg |
415 |
Q |
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| T |
37987348 |
tgtctgctgaaccgtggtgttggtttgtgtggtgggggagatgatg |
37987303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 697953 - 697999
Alignment:
| Q |
370 |
tgtctggtaaaccgtggtgttggtttgtgtggtgggggtgatgatgt |
416 |
Q |
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| T |
697953 |
tgtctgctaaaccgtggtgttggttagtgtggtgggggtgatgatgt |
697999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 10243788 - 10243825
Alignment:
| Q |
379 |
aaccgtggtgttggtttgtgtggtgggggtgatgatgt |
416 |
Q |
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| T |
10243788 |
aaccgtggtgttggtttgtgtggtgggggtgatgatgt |
10243825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 46693294 - 46693262
Alignment:
| Q |
384 |
tggtgttggtttgtgtggtgggggtgatgatgt |
416 |
Q |
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| T |
46693294 |
tggtgttggtttgtgtggtgggggtgatgatgt |
46693262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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