View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13443_high_1 (Length: 514)
Name: NF13443_high_1
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13443_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Original strand, 21102017 - 21102483
Alignment:
| Q |
20 |
acatcatcctttgcatcaaactcagtttttgcatatcttccaatcgaaacagaaggttttctaactgatcccgaaaccaatgcaccataaaacctcatgt |
119 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
21102017 |
acatcttcctttgcatcaaactcagtttttgcatatcttccaatcgaaacagatggttttccaactgatcccgaaaccaatgaaccataaaacctcatgt |
21102116 |
T |
|
| Q |
120 |
actcatatccagcaataatcctcttctcttgtaatgtgtaagatggtggagggatgccatatgagttgcatatttgagcaagttccacttgaaggttgtg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21102117 |
actcatatccagcaataatcctcttctcttgtaatgtgtaagatggtggagggatgccatatgggttgcatatttgagcaagttccacttgaaggttgtg |
21102216 |
T |
|
| Q |
220 |
atgaatgacaaatttatcaatactagtgtcttcagcaataaatttagcatgagtagtgtcgacatagtaacacaacataagggcaatgagaaatatccat |
319 |
Q |
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||||||||||||||||||| ||||||||| || ||| ||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
21102217 |
atgaatgacaaatttatcactactagtgtatttagccataaatttatcatgagtagtgtctacatagtaacacaacataagggcatttagaaatatccat |
21102316 |
T |
|
| Q |
320 |
atatacatatatttggaaaaacaatttataaatgaaaaactaaccattaacttcaacaacaagagaggtagaggatgtttgggtctctaaagtcacatga |
419 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21102317 |
atatacatatatttggaaaaacaaattataaatgaaaaactaaccattaacttcaacaacaagagaggtagaggatgtttgggtctctaaagtcacatga |
21102416 |
T |
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| Q |
420 |
tttccctttcttggatcatggccctttttcttacaaaatctatcccacgagttccatgcattgctat |
486 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21102417 |
tttcccttgcttggatcatggccctttttcttacaaaatctatcccacgagttccatgcatggctat |
21102483 |
T |
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