View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13443_high_14 (Length: 356)

Name: NF13443_high_14
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13443_high_14
NF13443_high_14
[»] chr2 (7 HSPs)
chr2 (190-330)||(1895402-1895542)
chr2 (190-330)||(17281934-17282075)
chr2 (190-330)||(1551588-1551728)
chr2 (190-303)||(3921584-3921697)
chr2 (192-330)||(17375271-17375409)
chr2 (190-263)||(34660278-34660351)
chr2 (190-263)||(4869637-4869710)
[»] chr6 (2 HSPs)
chr6 (190-330)||(20740570-20740710)
chr6 (190-327)||(21881459-21881596)
[»] chr4 (7 HSPs)
chr4 (187-330)||(47518441-47518584)
chr4 (190-330)||(53202258-53202398)
chr4 (190-281)||(34227057-34227148)
chr4 (190-330)||(23054224-23054363)
chr4 (212-329)||(6410005-6410122)
chr4 (195-260)||(12469342-12469407)
chr4 (212-260)||(12466698-12466746)
[»] chr5 (9 HSPs)
chr5 (187-330)||(18696922-18697065)
chr5 (190-330)||(7766995-7767135)
chr5 (213-300)||(41355543-41355630)
chr5 (190-325)||(27170084-27170219)
chr5 (190-261)||(38958230-38958301)
chr5 (190-256)||(7271826-7271892)
chr5 (190-263)||(6030388-6030461)
chr5 (213-263)||(26656780-26656830)
chr5 (213-263)||(26928367-26928417)
[»] chr8 (3 HSPs)
chr8 (187-330)||(10408814-10408957)
chr8 (190-316)||(5994622-5994748)
chr8 (190-328)||(6444027-6444165)
[»] chr1 (6 HSPs)
chr1 (217-330)||(34117991-34118104)
chr1 (187-303)||(34654967-34655083)
chr1 (191-301)||(26236671-26236781)
chr1 (213-303)||(39709015-39709105)
chr1 (190-263)||(615753-615826)
chr1 (213-330)||(11407975-11408092)
[»] chr7 (1 HSPs)
chr7 (190-330)||(3302567-3302707)
[»] chr3 (2 HSPs)
chr3 (190-263)||(18269763-18269836)
chr3 (218-264)||(43275999-43276045)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 1895402 - 1895542
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895402 ccaaaatcaataccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 1895501  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  1895502 gactcatcaccaccatcatgaccgatcaatcaccacctatg 1895542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 190 - 330
Target Start/End: Complemental strand, 17282075 - 17281934
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaa-ctaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagata 288  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17282075 ccaaaatcagcaccaccaagaaaaccaccatgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagata 17281976  T
Q  289 tgacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    ||| |||||||||||||  |||| |||| |||||||||||||    
T  17281975 tgatccatcaccaccattgtgactgatccatcaccacctatg 17281934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 190 - 330
Target Start/End: Complemental strand, 1551728 - 1551588
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    |||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | ||    
T  1551728 ccaaaatcagcactaccaagaaaaccaccacgaagtaccacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacat 1551629  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    || |||||||||||||| |||| |||| |||||||||||||    
T  1551628 gatccatcaccaccatcgtgactgatccatcaccacctatg 1551588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 190 - 303
Target Start/End: Original strand, 3921584 - 3921697
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  3921584 ccaaaatcagcaccaccaagaaaaccaccgtgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatat 3921683  T
Q  290 gacccatcaccacc 303  Q
    || |||||||||||    
T  3921684 gatccatcaccacc 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 192 - 330
Target Start/End: Original strand, 17375271 - 17375409
Alignment:
Q  192 aaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatga 291  Q
    |||||||| ||||||| ||||||   ||||||| ||||||||| ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  17375271 aaaatcagcaccaccatgaaaactgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatga 17375370  T
Q  292 cccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
     |||||||||||||| ||| ||||| |||||||||||||    
T  17375371 tccatcaccaccatcgtgatcgatccatcaccacctatg 17375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 34660278 - 34660351
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 263  Q
    |||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  34660278 ccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 4869637 - 4869710
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 263  Q
    |||||||||| |||| || ||||||| |||||||| ||| ||||| || ||||||||||||||||| |||||||    
T  4869637 ccaaaatcagcaccatcatgaaaaccgccatgaagcaccgcaaaccaaaacaaccaaagatccatcaaaaccat 4869710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 20740570 - 20740710
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20740570 ccaaaatcagcaccaccaagaaaaccaccatgaagtaccataaaccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatat 20740669  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    || |||||||||||||| ||||| ||| |||||||||||||    
T  20740670 gatccatcaccaccatcgtgaccaatccatcaccacctatg 20740710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 327
Target Start/End: Original strand, 21881459 - 21881596
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    |||||||||| ||||||| || |||  |||||||| ||||||||| |||| |||||||||| |||||||||||||  |||||||||||||||||||||||    
T  21881459 ccaaaatcagcaccaccatgataactgccatgaagcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatat 21881558  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccacct 327  Q
    || |||||||||||||| ||||||||| ||||||||||    
T  21881559 gatccatcaccaccatcgtgaccgatccatcaccacct 21881596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 187 - 330
Target Start/End: Complemental strand, 47518584 - 47518441
Alignment:
Q  187 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 286  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47518584 gatccaaaatcagcaacaccaagaaaaccaccatgaagtaccacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 47518485  T
Q  287 tatgacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    |||||  ||||||||||||  |||| |||| |||||||||||||    
T  47518484 tatgattcatcaccaccattgtgactgatccatcaccacctatg 47518441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 53202258 - 53202398
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    |||||||||  |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53202258 ccaaaatcaacaccaccaagaaaaccatcatgaagtaccacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatat 53202357  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    ||  ||||||||||||| |||||||||  ||||||||||||    
T  53202358 gattcatcaccaccatcgtgaccgatctgtcaccacctatg 53202398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 34227148 - 34227057
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaac 281  Q
    |||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||    
T  34227148 ccaaaatcagcaccaccaagaaagccaccatgaagtaccacagaccaacacaaccaaagatccattgaaaccatataagttcataagcgaac 34227057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 190 - 330
Target Start/End: Complemental strand, 23054363 - 23054224
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    |||||||||| ||||||| ||||||| |||| ||| ||||| ||| ||||||||||||||||||| |||||||||  |||||||||||||||| ||||||    
T  23054363 ccaaaatcagcaccaccatgaaaaccgccataaagcaccacgaaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatat 23054264  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    || ||| || ||||||| |||| |||| |||||||||||||    
T  23054263 gatccagca-caccatcgtgactgatccatcaccacctatg 23054224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 6410005 - 6410122
Alignment:
Q  212 aaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccaccatcatgac 311  Q
    ||||||||||||| ||||||||| ||||||||| ||||| |||||||||||||  || ||||||||||||  |||| ||| | ||| ||||| || ||||    
T  6410005 aaccaccatgaagcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgac 6410104  T
Q  312 cgatcaatcaccacctat 329  Q
    ||||| ||||||||||||    
T  6410105 cgatccatcaccacctat 6410122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 12469407 - 12469342
Alignment:
Q  195 atcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaac 260  Q
    ||||| ||||||| |  ||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  12469407 atcagcaccaccatggtaaccaccatgaaggaccacaaaccaacacaaccaaggatccatcgaaac 12469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 12466746 - 12466698
Alignment:
Q  212 aaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaac 260  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||||||||    
T  12466746 aaccaccatgaaggaccacaaaccaacataaccaaggatccatcgaaac 12466698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 187 - 330
Target Start/End: Original strand, 18696922 - 18697065
Alignment:
Q  187 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 286  Q
    ||||||||||||| | ||||| ||||| | |||||||| ||||||||| |||||||||||||||||| |||| |||||  ||||||||||||||||||||    
T  18696922 gatccaaaatcagcaacaccatgaaaaacgccatgaagcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctaga 18697021  T
Q  287 tatgacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    ||||| |||||||||||||| |||| |||| |||||||||||||    
T  18697022 tatgatccatcaccaccatcgtgactgatccatcaccacctatg 18697065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 190 - 330
Target Start/End: Complemental strand, 7767135 - 7766995
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    |||||||||  ||||||| |||| || |||||||| ||||||||| |||||||||||||||||||||||||||||  | |||||||| ||||||||||||    
T  7767135 ccaaaatcaacaccaccatgaaacccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatat 7767036  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    || |||||||||||||  || ||||||||||||||||||||    
T  7767035 gatccatcaccaccattgtggccgatcaatcaccacctatg 7766995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 41355630 - 41355543
Alignment:
Q  213 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcacc 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  41355630 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatccatcacc 41355543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 27170219 - 27170084
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    ||||||| || ||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||  ||||| ||||  || | | ||||    
T  27170219 ccaaaattagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatat 27170120  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccac 325  Q
    || |||| ||||||||| ||||||||| ||||||||    
T  27170119 gatccattaccaccatcgtgaccgatccatcaccac 27170084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 38958301 - 38958230
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaacc 261  Q
    |||||||||| |||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  38958301 ccaaaatcagcaccatcaaaaaaaccaccatgaagtatcacaaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 7271826 - 7271892
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcg 256  Q
    |||||||||| ||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  7271826 ccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 6030461 - 6030388
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 263  Q
    |||||||||| ||||||| |||||||  || |||| ||||||||| ||||||||||||||||||||||||||||    
T  6030461 ccaaaatcagcaccaccatgaaaaccgtcaggaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 26656780 - 26656830
Alignment:
Q  213 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 263  Q
    |||||||||||| |||| |||| || |||||||||||||| ||||||||||    
T  26656780 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26656830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 26928367 - 26928417
Alignment:
Q  213 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 263  Q
    |||||||||||| |||| |||| || |||||||||||||| ||||||||||    
T  26928367 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26928417  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 330
Target Start/End: Original strand, 10408814 - 10408957
Alignment:
Q  187 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 286  Q
    |||||||||| || |||||||  |||||| |||||||| ||||||||| ||||||||||||||| |||||||||||||  |  |||||||||||||||||    
T  10408814 gatccaaaattagcaccaccattaaaacctccatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctaga 10408913  T
Q  287 tatgacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    ||||| |||||||||||||| |||||| || |||||||||||||    
T  10408914 tatgatccatcaccaccatcgtgaccgttccatcaccacctatg 10408957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 316
Target Start/End: Original strand, 5994622 - 5994748
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    |||||||||  | ||||| ||| ||| |||||||| ||||||||| |||||||||||||||||||| ||||||||  |||||||||||||||| ||||||    
T  5994622 ccaaaatcaacatcaccatgaataccgccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatat 5994721  T
Q  290 gacccatcaccaccatcatgaccgatc 316  Q
    || |||||||||||||||||| |||||    
T  5994722 gatccatcaccaccatcatgatcgatc 5994748  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 190 - 328
Target Start/End: Original strand, 6444027 - 6444165
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    ||||||||||  |||||| ||||||||||| |||||||||||||| ||||||| ||||||| | |||||||||||  || ||||| ||||||  | || |    
T  6444027 ccaaaatcagccccaccatgaaaaccaccacgaagtaccacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatct 6444126  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccaccta 328  Q
    || ||||||||||| |  ||||| ||| || ||||||||    
T  6444127 gatccatcaccacctttgtgaccaatccataaccaccta 6444165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 330
Target Start/End: Original strand, 34117991 - 34118104
Alignment:
Q  217 ccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccaccatcatgaccgatc 316  Q
    |||||| | ||||||||  ||||||||||||||||||  |||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  34117991 ccatgaggcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatc 34118090  T
Q  317 aatcaccacctatg 330  Q
     |||||||||||||    
T  34118091 catcaccacctatg 34118104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 187 - 303
Target Start/End: Original strand, 34654967 - 34655083
Alignment:
Q  187 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 286  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||| ||||||| |||| ||||||||  | ||||||||||||||||||    
T  34654967 gatccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctaga 34655066  T
Q  287 tatgacccatcaccacc 303  Q
    ||||| |||||||||||    
T  34655067 tatgatccatcaccacc 34655083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 26236781 - 26236671
Alignment:
Q  191 caaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatg 290  Q
    ||||||||| |||| || |||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||  || ||||||| ||||| |||| ||    
T  26236781 caaaatcagcaccatcatgaaaaccaccatgaagcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctg 26236682  T
Q  291 acccatcacca 301  Q
    | |||||||||    
T  26236681 atccatcacca 26236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 39709105 - 39709015
Alignment:
Q  213 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccacc 303  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||||||||  ||||| |||||||||| ||||| || |||||||||||    
T  39709105 accaccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc 39709015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 615753 - 615826
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 263  Q
    ||||| |||| ||||||| |||||||  ||||||| |||||||||||||||||||||||||||||| |||||||    
T  615753 ccaaattcagcaccaccatgaaaaccgtcatgaagcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 11408092 - 11407975
Alignment:
Q  213 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccaccatcatgacc 312  Q
    |||||||||||| ||||||||| |||||||||||||||   |||||||||||  |  |||||||| |||| | || ||| ||||||||||| || || ||    
T  11408092 accaccatgaagcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggcc 11407993  T
Q  313 gatcaatcaccacctatg 330  Q
    |||| |||||||| ||||    
T  11407992 gatccatcaccacttatg 11407975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 3302567 - 3302707
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 289  Q
    |||||||||  ||||||| ||||||   ||||||| |||||| || || |||||||||||||||||||||| |||  |||| ||||||||| ||||||||    
T  3302567 ccaaaatcaacaccaccatgaaaactgtcatgaagcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatat 3302666  T
Q  290 gacccatcaccaccatcatgaccgatcaatcaccacctatg 330  Q
    ||   |||||||||||| ||| ||||| |||||||||||||    
T  3302667 gatgtatcaccaccatcgtgatcgatctatcaccacctatg 3302707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 18269836 - 18269763
Alignment:
Q  190 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 263  Q
    |||||||||  ||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18269836 ccaaaatcaacaccaccatgaaaaccaccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 43275999 - 43276045
Alignment:
Q  218 catgaagtaccacaaactaacacaaccaaagatccatcgaaaccata 264  Q
    ||||||| ||||||||| ||||||||||||||| |||||||| ||||    
T  43275999 catgaagcaccacaaaccaacacaaccaaagattcatcgaaatcata 43276045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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