View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13443_high_15 (Length: 354)
Name: NF13443_high_15
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13443_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 31 - 335
Target Start/End: Original strand, 180976 - 181280
Alignment:
| Q |
31 |
aatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttg |
130 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
180976 |
aatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttg |
181075 |
T |
|
| Q |
131 |
aatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtc |
230 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
181076 |
aattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttccagtaacagtgatctctacacctttcattatatgtc |
181175 |
T |
|
| Q |
231 |
tcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactgatg |
330 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
181176 |
tcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatg |
181275 |
T |
|
| Q |
331 |
atgtc |
335 |
Q |
| |
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||||| |
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| T |
181276 |
atgtc |
181280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 1701402 - 1701707
Alignment:
| Q |
30 |
caatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatctt |
129 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1701402 |
caatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatctt |
1701501 |
T |
|
| Q |
130 |
gaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgt |
229 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
1701502 |
gaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggttcaagtaacagtgatctctacacctttcatcctaagt |
1701601 |
T |
|
| Q |
230 |
ctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactgat |
329 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
1701602 |
ctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctcgtttcggtcatccctctttcagagttcttgcacaaat |
1701701 |
T |
|
| Q |
330 |
gatgtc |
335 |
Q |
| |
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|||||| |
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|
| T |
1701702 |
gatgtc |
1701707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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