View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13443_high_19 (Length: 326)
Name: NF13443_high_19
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13443_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 174 - 300
Target Start/End: Original strand, 16594559 - 16594683
Alignment:
| Q |
174 |
gttcagacacataacataatgtattgaaacccaaacaactggatctaaaaaactcatatctaaaacccaaagccacatgttccaaatcaaaacaaaagaa |
273 |
Q |
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| T |
16594559 |
gttcagacacataacataatgtattgaaacccaaaca-ctggat-taaaaaactcatatctaaaactcatagccacatgttccaaatcaaaacaaaagaa |
16594656 |
T |
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| Q |
274 |
ttaaacataaaaatggataggattgag |
300 |
Q |
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| T |
16594657 |
ttaaacataaaaatggataggattgag |
16594683 |
T |
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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 16594386 - 16594483
Alignment:
| Q |
1 |
acatcatcaatacaaaagtatactaagggcaactacaattataacttaaaaaattcaatttatttaactaacttaattaatatttataaatgtatgaa |
98 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16594386 |
acatcatcaaaacaaaagcatactaagggcaactacaattataacttaaaaaattcaatttatttaactaacttaattaatatttataaatgtatgaa |
16594483 |
T |
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