View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13443_high_24 (Length: 321)

Name: NF13443_high_24
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13443_high_24
NF13443_high_24
[»] chr4 (5 HSPs)
chr4 (40-321)||(48912127-48912408)
chr4 (44-278)||(48958264-48958498)
chr4 (37-321)||(48965442-48965723)
chr4 (44-198)||(48961413-48961567)
chr4 (92-219)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (44-321)||(6293-6570)
scaffold0536 (40-321)||(10277-10556)
[»] chr6 (2 HSPs)
chr6 (44-315)||(12589957-12590231)
chr6 (90-321)||(12483246-12483477)
[»] chr2 (3 HSPs)
chr2 (90-277)||(13440363-13440550)
chr2 (40-239)||(13448479-13448675)
chr2 (93-180)||(13455000-13455087)
[»] chr7 (1 HSPs)
chr7 (76-299)||(3417334-3417557)
[»] chr5 (2 HSPs)
chr5 (76-277)||(28385483-28385684)
chr5 (90-282)||(12540848-12541040)
[»] chr8 (1 HSPs)
chr8 (90-231)||(12641353-12641494)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 48912408 - 48912127
Alignment:
Q  40 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912408 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 48912309  T
Q  140 tcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 239  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912308 tcattctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 48912209  T
Q  240 gacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcac 321  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912208 gacattggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcac 48912127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 44 - 278
Target Start/End: Original strand, 48958264 - 48958498
Alignment:
Q  44 tgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcat 143  Q
    ||||| ||||| ||| |||| |||| | | ||||||||||| ||  |||||||||| || || || |||||||| ||| |||||||||||||| | || |    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgt 48958363  T
Q  144 gctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgaca 243  Q
      ||  ||| |||||| ||||||||||||||||  ||||||||||  |||||||| ||||| |||||||||||||||||||||||||| || |||| |||    
T  48958364 cttctttccctttcttctcaggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataaca 48958463  T
Q  244 tcggcttccaaagcatatgtacaccaccgagttat 278  Q
    |  |||||||||||||||||||| ||| |||||||    
T  48958464 tatgcttccaaagcatatgtacaacactgagttat 48958498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 321
Target Start/End: Original strand, 48965442 - 48965723
Alignment:
Q  37 cagaacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttca 136  Q
    ||||||||| |||||||||||| ||||||||| | |||||||   ||| ||  |||||||||| || |||||||| ||||| ||||  ||||||||||||    
T  48965442 cagaacctgcggagcccaacccctaataatcaaacccttctt---tccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttca 48965538  T
Q  137 ttgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaa 236  Q
     | |||| |||  |||  || ||    |||| ||||||||| || || |||| ||||||||| ||  | ||||||||||||||||| |||||||||  |     
T  48965539 ctctcatcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgat 48965638  T
Q  237 aatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcac 321  Q
    || ||||  |||||||||||| |||||||| ||| ||||||| | | || || || ||||||||||||||||| ||||| |||||    
T  48965639 aacgacagaggcttccaaagcttatgtacaacactgagttatgtcgcttggaattgagccaactcaaacactcttgcacgctcac 48965723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 48961413 - 48961567
Alignment:
Q  44 tgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcat 143  Q
    ||||| ||||| |||||||| |||| | ||||||||||| | ||  ||||||||||||| || || |||||||| || ||||||||||||||  | ||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcat 48961512  T
Q  144 gctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttc 198  Q
     | |  ||| ||| || ||||||||||||||||  |||||||||| |||||||||    
T  48961513 ccactttcccttttttctcaggaacaacccatacaaattcgtgacccgatgcttc 48961567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 48951399 - 48951526
Alignment:
Q  92 ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg 191  Q
    |||||||||||| || | || ||||||||||| |||||||| ||| | || | |||| |||  |||||||| || ||||||||||||||||| | ||  |    
T  48951399 ctctcttcaaactccctgggtaaccatttttccttctcctcatcactctcgttctccttccccttcttttctgggacaacccatatgaattcataacctg 48951498  T
Q  192 atgcttcaatcccgcacgcaatctcata 219  Q
    || |||| ||| |||  |||||||||||    
T  48951499 attcttctatcgcgcttgcaatctcata 48951526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 44 - 321
Target Start/End: Complemental strand, 6570 - 6293
Alignment:
Q  44 tgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcat 143  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||| | ||||    
T  6570 tgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcat 6471  T
Q  144 gctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgaca 243  Q
      ||  ||| |||||| |||||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | ||    
T  6470 cttctttccctttcttctcaggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggca 6371  T
Q  244 tcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcac 321  Q
    |  |||||||||||||||||||| ||| ||||||||| | |||||||  |||||||||| |||||| |||||||||||    
T  6370 taagcttccaaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcac 6293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 10556 - 10277
Alignment:
Q  40 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 139  Q
    |||||| || ||||||||||||||||||| | ||||||||||| | |||| ||| |||||||| || || || | |||||||||||||||||||| | |     
T  10556 aacctgaggggcccaacccttaataatcaaacccttcttctttgcaataactctttcttcaaatcctttcggtagccatttttctttctcctcttgactc 10457  T
Q  140 tcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 239  Q
    |||| |||  ||| |||||| ||||||||||| ||||  ||||||| || ||||||||| | || ||||||||||||||||||||||||||| |||||||    
T  10456 tcattctctttccctttcttctcaggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaat 10357  T
Q  240 gacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcac 321  Q
     |||| ||||||||||||| ||||||| ||| ||  ||||| | ||| ||||||||||||||| |||||| |||||||||||    
T  10356 aacataggcttccaaagcaaatgtacaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcac 10277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 315
Target Start/End: Complemental strand, 12590231 - 12589957
Alignment:
Q  44 tgtggagcccaacccttaataatcatagccttcttctttc---cgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgt 140  Q
    ||||| ||||||||| |||| |||| | ||||||||||||   | ||  ||||||||||||| ||  | ||||||||||||| ||| ||||| ||| | |    
T  12590231 tgtggggcccaacccctaatgatcaaacccttcttctttctcccaatgtttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactct 12590132  T
Q  141 catgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatg 240  Q
    |||  ||| ||| ||| || || |||| |||||||| ||||||||| |  |||||||| || || |||| ||||||||||||||||||||| || ||||     
T  12590131 catcttccttcccttttttctcgggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaata 12590032  T
Q  241 acatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcac 315  Q
     |||  ||| |||||||||||||||| ||| ||||||||| | |||||||| |||||||||| |||||| |||||    
T  12590031 gcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgagtttagccaactcagacactcttgcac 12589957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 321
Target Start/End: Complemental strand, 12483477 - 12483246
Alignment:
Q  90 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 189  Q
    ||||||| ||||| ||||| |||||||| |||||||||||||| ||  | ||||  ||| ||| ||| || ||||||||||||||||||||||  | ||     
T  12483477 ttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttctcaggaacaacccatatgaattttttacc 12483378  T
Q  190 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 289  Q
    ||||||||| || ||||| | ||| || ||||| |||||||| || ||||  ||| |||| |||||||||||||||| ||| || || ||||| || |||    
T  12483377 cgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttcttgctttgag 12483278  T
Q  290 ttaagccaactcaaacactcgtgcacactcac 321  Q
    || ||||||||   |||||| ||||| |||||    
T  12483277 tttagccaactttgacactcatgcacgctcac 12483246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 277
Target Start/End: Original strand, 13440363 - 13440550
Alignment:
Q  90 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 189  Q
    |||||||||| || |||||||||||||| ||||||||||| || ||| | ||||  ||  ||| |||||| |||||||||||||||||||||  ||||||    
T  13440363 ttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctcaggaacaacccatatgaatgggtgact 13440462  T
Q  190 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagtta 277  Q
     |||||||| ||  ||||||| |||||||| ||||||||||| || ||||       ||||||||| |||||||||| ||||||||||    
T  13440463 agatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgtacaacaccgagtta 13440550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 13448479 - 13448675
Alignment:
Q  40 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 139  Q
    ||||||||| ||||||||| |||| |||| | ||||||||   |||||| ||||||||||||| ||||| || ||||| ||||||||||| |||||  |     
T  13448479 aacctgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctc 13448575  T
Q  140 tcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 239  Q
    ||||  ||  ||| |||||| |||||||||||||||||||||  |||||  |||||||| ||| | || || ||||| || ||||||||||| |||||||    
T  13448576 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 13448675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 13455000 - 13455087
Alignment:
Q  93 tctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa 180  Q
    |||||||||| ||||| |||||||| |||| ||||||||||||  | ||||  ||  ||| |||||| || |||||||||||||||||    
T  13455000 tctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctccggaacaacccatatgaa 13455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 299
Target Start/End: Complemental strand, 3417557 - 3417334
Alignment:
Q  76 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 175  Q
    ||||||||| ||  ||||||| ||||| ||||| |||||||| ||||||||||| ||||| || ||||  ||  | | |||||| ||| |||||||||||    
T  3417557 cttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttctcaagaacaacccat 3417458  T
Q  176 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 275  Q
    ||||||  ||||| ||||||||| ||  || | ||||||||||| ||||||||||| || ||||    |  ||||||||| |||||||||| ||| ||||    
T  3417457 atgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgtacaacactgagt 3417358  T
Q  276 tatcttgtttcgagttaagccaac 299  Q
    || ||||||  ||||| |||||||    
T  3417357 taacttgttgtgagttgagccaac 3417334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 277
Target Start/End: Original strand, 28385483 - 28385684
Alignment:
Q  76 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 175  Q
    ||||||||| ||  ||||||| ||||| |||||||||| ||| ||||||||||| |||||  | ||||  ||  ||| |||||| |||||||||||||||    
T  28385483 cttctttccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttctcaggaacaacccat 28385582  T
Q  176 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 275  Q
    ||||||  |||||  |||||||| |   |||| ||||||||||| ||||||||||| || |||||   |  ||||||||| ||||||||||| || ||||    
T  28385583 atgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgtacacaactgagt 28385682  T
Q  276 ta 277  Q
    ||    
T  28385683 ta 28385684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 282
Target Start/End: Original strand, 12540848 - 12541040
Alignment:
Q  90 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 189  Q
    ||||||| ||||| ||||| |||| ||| ||||||||||| |||||| | ||||  ||  ||| | |||| |||||||||||||||||||||  |||||     
T  12540848 ttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccctctcttctcaggaacaacccatatgaatgggtgacc 12540947  T
Q  190 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttg 282  Q
    |  | |||| |   | || ||||||||||| |||||||| ||  | ||||||  |  ||||||||| |||||||||||||| |||||| ||||    
T  12540948 cattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttg 12541040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 12641494 - 12641353
Alignment:
Q  90 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 189  Q
    |||||||||| || || || |||||||| |||||||||||||||||| | ||||  |   ||| |||||| ||||||||||||||||  ||||||||||     
T  12641494 ttctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgacc 12641395  T
Q  190 cgatgcttcaatcccgcacgcaatctcataaagttgtttatc 231  Q
     ||   ||| || |||| ||||||||| ||||||||||||||    
T  12641394 tgaattttctattccgctcgcaatctcgtaaagttgtttatc 12641353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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