View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13443_high_27 (Length: 312)
Name: NF13443_high_27
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13443_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 6639564 - 6639848
Alignment:
| Q |
1 |
taattttcttacaatctcaccttaattattaacatcgtagaccaagcaaaaatggagacacacatctctcgttggtccatcttcgatcaagtagatttgc |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6639564 |
taattttcttacaatctcaccttaattatta-catcgtagaccaagcaaaaatggagaaacacatctctcgttggtccatcttcgatcaagtagatttgc |
6639662 |
T |
|
| Q |
101 |
gcaaaatctaattttcactattttggatatgnnnnnnncttacaaaataattgaatttccgtgcttaccgtcattcccnnnnnnngtactacatattctt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6639663 |
gcaaaatctaattttcactattttggatatgtttttttcttacaaaataattgaatttccgtgcttaccgtcattccctttttttgtactacatattctt |
6639762 |
T |
|
| Q |
201 |
tatc-tttaagttttaacattcttgaaaagcaaacatgttgaattattttctttatgttcttcaatatatattgaagtttgatgtt |
285 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6639763 |
tatcttttaagttttaacattcttgaaaagcaaacatgttgaattattttctttatgttcttcaatatatattgaagtttgatgtt |
6639848 |
T |
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