View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13443_high_3 (Length: 464)
Name: NF13443_high_3
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13443_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 108 - 434
Target Start/End: Complemental strand, 42038840 - 42038514
Alignment:
| Q |
108 |
gtacatgttcagtatcacactgactaagtgagtgactttgccacaatcacatgggctcaacgtgattctggcaaaaccaccgtgatatcagacacgtact |
207 |
Q |
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| T |
42038840 |
gtacatgttcagtatcccagtgactaagtcagtgactttgccacaatcacatcggctcaacgtgattctggcaaaaccactgtgatatcagacacgtact |
42038741 |
T |
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| Q |
208 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
307 |
Q |
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| T |
42038740 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
42038641 |
T |
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| Q |
308 |
gatgcaatggagttgcagcagatgtaggtgtatggtacacctgattcctcaatcacacgtctaaccaaacgtttctgtttgtacattgctaggcctggct |
407 |
Q |
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| T |
42038640 |
gatgcaatggagttgcagcagatgtaggtgtatggtacacctgattcctcaatcacacgtctaaccaaacgtttctgtttgtacattgcaaggcctggct |
42038541 |
T |
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| Q |
408 |
ccacaggatctgctctgtccacatcgt |
434 |
Q |
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| T |
42038540 |
ccacaggatctgctctgtccacatcgt |
42038514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 42038965 - 42038845
Alignment:
| Q |
15 |
catcatcaaagtaagctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggtacatg |
114 |
Q |
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| T |
42038965 |
catcaacaaagtacgctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggtacatg |
42038866 |
T |
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| Q |
115 |
ttcagtatcacactgactaag |
135 |
Q |
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| T |
42038865 |
ttcagtatcacagtgactaag |
42038845 |
T |
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