View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13443_high_30 (Length: 300)
Name: NF13443_high_30
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13443_high_30 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 29137828 - 29138116
Alignment:
| Q |
11 |
cataggggcaaagtgattacttctacagttgttccagatgttcagcctcccatggtaaatatatactattaatcaatttgaatagatttggaaagaaaca |
110 |
Q |
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| T |
29137828 |
cataggggcaaagtgattacttctacagttgttccagatgttcagcctcccatggtaaatatatactattaatcaatttgaatggatttggaaagaaaca |
29137927 |
T |
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| Q |
111 |
catgtttggacagattnnnnnnnttgggatgattaatataaccaataatctattcaaaattgtttctttacattattcactgtgaacctacaggatgctg |
210 |
Q |
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| T |
29137928 |
catgtttggacagattaaaaaa-ttgggattattaatataaccaataatctattcaaaattgtttatttacattattcactgtgaacctacaggatgctg |
29138026 |
T |
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| Q |
211 |
tggagtatgctgaatgcgaagctgttgtaaaggactttcctccatttcgagaggcaatgaagaaaagaggaattgaagatatggatcttg |
300 |
Q |
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| T |
29138027 |
tggagtatgctgaatgcgaagctgttgtaaaggactttcctccatttcgagaggcaatgaagaaaagaggaattgaagatatggatcttg |
29138116 |
T |
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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 14296070 - 14296169
Alignment:
| Q |
201 |
caggatgctgtggagtatgctgaatgcgaagctgttgtaaaggactttcctccatttcgagaggcaatgaagaaaagaggaattgaagatatggatcttg |
300 |
Q |
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| T |
14296070 |
caggatgccatggagtatgccgaatgtgaagctgttgtgaaggacttccctccatttcgagaagctatgaagaggagagggattgaggatatggatcttg |
14296169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 34612762 - 34612860
Alignment:
| Q |
202 |
aggatgctgtggagtatgctgaatgcgaagctgttgtaaaggactttcctccatttcgagaggcaatgaagaaaagaggaattgaagatatggatcttg |
300 |
Q |
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| T |
34612762 |
aggatgctgaggaatatgcagaatgcgaggctgttgttaaaagttttcccccttttatagaggctatgaagaaaaggggtattgaagacatggatcttg |
34612860 |
T |
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