View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13443_high_4 (Length: 450)
Name: NF13443_high_4
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13443_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 4986154 - 4985817
Alignment:
| Q |
20 |
tgacacaagaatttagagctaataagagcaacaatataagaatgtgttaaaatggggacattaacatcatgcaaaaatatggtaagacacactaacctta |
119 |
Q |
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| T |
4986154 |
tgacacaagaatttagagctaataagagcaacaa-ataacaatgtgttaaaatggggacattaacatcatgcaaaaatatggtaagacacactaacctta |
4986056 |
T |
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| Q |
120 |
aaaatgagactgttannnnnnnaaaccttttttatgacataacagttgccataatctcaaggaatctcacctacaaagttcattgtcaacagttaggttt |
219 |
Q |
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| T |
4986055 |
aaaatgagactgttatttttttaaaccttttttatgacataacagttgccataatctcaaggaatctcaccgacaaagttcattgtcaacagttaggttt |
4985956 |
T |
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| Q |
220 |
gaaatttgattgagactttggagctcaaaattttcaactgtcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaatttaaac |
319 |
Q |
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| T |
4985955 |
gaaatttgattgagactttggagctcaaaattttctactttcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaatttaaac |
4985856 |
T |
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| Q |
320 |
aaattttgatacacaatcaagaataaaatatcttctcag |
358 |
Q |
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| T |
4985855 |
aaattttgatatacaatcaagaataaaatatcttctcag |
4985817 |
T |
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