View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13443_high_7 (Length: 374)
Name: NF13443_high_7
Description: NF13443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13443_high_7 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0111 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 13581458 - 13581096
Alignment:
| Q |
11 |
caaaggggaaggcgcagattccagtcaagaaaattcagtgggtgcctacaaaagagaatcctcccggtataggttcatccaatgcattttcagcacttac |
110 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13581458 |
caaaggggaaggcgcaaattccagtcaagaaaattcagtgggtgcctacaaaagagaatcctcccggtataggttcatccaatgcattttcagcacttat |
13581359 |
T |
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| Q |
111 |
ggagccacaacaaataattgttgcttatgatgttgccatcactgcggctccaacacaaacacaaacacatccttgtgtgtctgatgagattcctcaaggt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
13581358 |
agagccacaacaaataattgttgcttatgatgttgccaccactgcggctccaacacaaacacagacacatccttgcgtgtctgatgagattcctcaaggt |
13581259 |
T |
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| Q |
211 |
tctttaccttcgcgccccgtgttggagttaacttcccttgttgatgatgtgtacgctggcgtgctttcggatgatgtggaacaagttagtccataatcac |
310 |
Q |
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| T |
13581258 |
tctttaccttcgcgccccgtgttggagttaacttcccttgttgatgatgtgcacgctggcgtgctttcggatgatgtggaacgagttagtccataatcac |
13581159 |
T |
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| Q |
311 |
ggaaggagttggaggttccctggattcagggtgcacttgtgacacatccatcctcagatgccca |
374 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13581158 |
ggaaggagttggagg-tccccggattcagggtgcacttgtgacacatccatcctcagatgccca |
13581096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 187 - 374
Target Start/End: Original strand, 9284263 - 9284447
Alignment:
| Q |
187 |
gtgtctgatgagattcctcaaggttctttaccttcgcgccccgtgttggagttaacttcccttgttgatgatgtgtacgctggcgtgctttcggatgatg |
286 |
Q |
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|||||||||||||| |||||||| ||||| ||||||| || || ||||||||| |||||| |||||||||| || || ||||||||||||||||| |
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| T |
9284263 |
gtgtctgatgagatccctcaaggctctttgccttcgcacctagttttggagttagcttccc---ctgatgatgtgcacattgacgtgctttcggatgatg |
9284359 |
T |
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| Q |
287 |
tggaacaagttagtccataatcacggaaggagttggaggttccctggattcagggtgcacttgtgacacatccatcctcagatgccca |
374 |
Q |
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|||||||||| | | | |||| ||| |||||||| ||| ||| |||| || | ||||| ||||| ||||||||||||| ||||||| |
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| T |
9284360 |
tggaacaagtaaatttagaatcgcggggggagttggtggtaccccggatccacgatgcacctgtgatacatccatcctcaaatgccca |
9284447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 38500984 - 38500923
Alignment:
| Q |
49 |
tgggtgcctacaaaagagaatcctcccggtataggttcatccaatgcattttcagcacttac |
110 |
Q |
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|||||| |||| ||||| ||||| | ||||||||||||||||| |||||| |||||||||| |
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| T |
38500984 |
tgggtgtctacgaaagaaaatccatctggtataggttcatccaaagcatttgcagcacttac |
38500923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 365
Target Start/End: Original strand, 20951455 - 20951570
Alignment:
| Q |
250 |
gttgatgatgtgtacgctggcgtgctttcggatgatgtggaacaagttagtccataatcacggaaggagttggaggttccctggattcagggtgcacttg |
349 |
Q |
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|||||||||||| ||| || |||||||||||||||||||||||| |||| | || || ||||| ||||||||||| ||| | |||||||| ||||| || |
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| T |
20951455 |
gttgatgatgtgaacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagattctccggattcagaatgcacatg |
20951554 |
T |
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| Q |
350 |
tgacacatccatcctc |
365 |
Q |
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|||| |||||||||| |
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| T |
20951555 |
agacatatccatcctc |
20951570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 10288211 - 10288102
Alignment:
| Q |
184 |
tgtgtgtctgatgagattcctcaaggttctttaccttcgcgccccgtgttggagttaacttcccttgttgatgatgtgtacgctggcgtgctttcggatg |
283 |
Q |
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||||||||||| ||||| || ||||| ||||| ||||| ||||| | ||||||||| |||||| || ||||| || |||||| | |||||||||||| |
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| T |
10288211 |
tgtgtgtctgaggagatcccccaaggctctttgccttcacgcccaatattggagttagcttcccctg---atgatttgcacgctgtcatgctttcggatg |
10288115 |
T |
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| Q |
284 |
atgtggaacaagt |
296 |
Q |
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||||||||||||| |
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| T |
10288114 |
atgtggaacaagt |
10288102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 10303927 - 10303819
Alignment:
| Q |
184 |
tgtgtgtctgatgagattcctcaaggttctttaccttcgcgccccgtgttggagttaacttcccttgttgatgatgtgtacgctggcgtgctttcggatg |
283 |
Q |
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||||||||||| ||||| || ||||| ||||| |||| || ||| || ||||||||| |||||| |||||||||| |||||| |||||||| |||| |
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| T |
10303927 |
tgtgtgtctgaggagatcccccaaggctctttgcctttgcacccagtattggagttagcttccc---ctgatgatgtgcacgctgtcgtgcttttggat- |
10303832 |
T |
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| Q |
284 |
atgtggaacaagt |
296 |
Q |
| |
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||||||||||||| |
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| T |
10303831 |
atgtggaacaagt |
10303819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 324
Target Start/End: Complemental strand, 21492761 - 21492631
Alignment:
| Q |
191 |
ctgatgagattcctcaaggttctttaccttcgcgccccgtgttggagttaacttcccttgttgatgatgtgtacgctggcgtgctttcggatgatgtgga |
290 |
Q |
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|||||||||| || ||||| | || || ||| |||| |||||||||||| ||||||||| |||||||| ||| || ||||||||||||||||||||| |
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| T |
21492761 |
ctgatgagatcccccaaggaacattgccgtcgagccctgtgttggagttagcttcccttg---atgatgtgcacgatgacgtgctttcggatgatgtgga |
21492665 |
T |
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| Q |
291 |
acaagttagtccataatcacggaaggagttggag |
324 |
Q |
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||||||| | || |||||||| ||||||||||| |
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| T |
21492664 |
acaagtttattcagaatcacgggaggagttggag |
21492631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 33065900 - 33065794
Alignment:
| Q |
187 |
gtgtctgatgagattcctcaaggttctttaccttcgcgccccgtgttggagttaacttcccttgttgatgatgtgtacgctggcgtgctttcggatgatg |
286 |
Q |
| |
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|||||||| ||||| || ||||| ||||| ||||||||||| |||| ||||||| |||||| |||||||||| |||||| |||||||||||||| | |
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| T |
33065900 |
gtgtctgaggagatcccccaaggatctttgccttcgcgcccagtgtcggagttagcttccc---ctgatgatgtgcacgctgacgtgctttcggatgccg |
33065804 |
T |
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| Q |
287 |
tggaacaagt |
296 |
Q |
| |
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|||||||||| |
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| T |
33065803 |
tggaacaagt |
33065794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 336
Target Start/End: Complemental strand, 46232 - 46049
Alignment:
| Q |
150 |
cactgcggctccaacacaaacacaaacacatccttgtgtgtctgatgagattcctcaaggttctttaccttcgcgccccgtgttggagttaacttccctt |
249 |
Q |
| |
|
||||||||||||||||| | ||||||| || ||||||||||||||||| || |||| | || | ||| |||| |||||||||||| |||||||| |
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| T |
46232 |
cactgcggctccaacacttgctcaaacacccccctgtgtgtctgatgagatcccccaagaaacattgacgtcgagccctgtgttggagttagcttccctt |
46133 |
T |
|
| Q |
250 |
gttgatgatgtgtacgctggcgtgctttcggatgatgtggaacaagttagtccataatcacggaaggagttggaggttccctggatt |
336 |
Q |
| |
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| |||| || ||| || |||||||| ||||||||||||||||||| | || |||||||| ||||||||||| | ||||||||| |
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| T |
46132 |
gccgatg---tgcacgatgacgtgcttttggatgatgtggaacaagtttattcagaatcacgggaggagttggagataccctggatt |
46049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 29042254 - 29042378
Alignment:
| Q |
250 |
gttgatgatgtgtacgctggcgtgctttcggatgatgtggaacaagttagtccataatcacggaaggagttggaggttccctggattcagggtgcacttg |
349 |
Q |
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|||||||||||| || || |||||||||||||||||||||||| |||| | | || ||||| ||||||||||| ||||| | |||||| ||||| || |
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| T |
29042254 |
gttgatgatgtgcacaatgacgtgctttcggatgatgtggaacatgttaattcggaaccacgggaggagttggagattccccgaattcagaatgcacatg |
29042353 |
T |
|
| Q |
350 |
tgacacatccatcctcagatgccca |
374 |
Q |
| |
|
|||| |||||||||| |||||||| |
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| T |
29042354 |
agacaaatccatcctcggatgccca |
29042378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 13330387 - 13330304
Alignment:
| Q |
270 |
cgtgctttcggatgatgtggaacaagttagtcc-ataatcacggaaggagttggaggttccctggattcagggtgcacttgtgac |
353 |
Q |
| |
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|||||||||||||| || |||||| || ||||| ||||| || ||||||||||| ||||| ||||||||| |||||||||||| |
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| T |
13330387 |
cgtgctttcggatgttgaggaacatgtaagtccgataat-ttgggaggagttggagattccccggattcaggatgcacttgtgac |
13330304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 4516 - 4459
Alignment:
| Q |
49 |
tgggtgcctacaaaagagaatcctcccggtataggttcatccaatgcattttcagcac |
106 |
Q |
| |
|
|||||| |||||||||| ||||| | ||||||||||||||||| |||||| |||||| |
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|
| T |
4516 |
tgggtgtctacaaaagaaaatccatctggtataggttcatccaaagcatttgcagcac |
4459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 11293700 - 11293604
Alignment:
| Q |
10 |
gcaaaggggaaggcgcagattccagtcaagaaaattcagtgggtgcctacaaaagagaatcctcccggtataggttcatccaatgcattttcagcac |
106 |
Q |
| |
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||||| |||||| ||||||| |||| || ||| ||| |||||| |||| ||||| ||||| | ||||||||||||||||| |||||| |||||| |
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| T |
11293700 |
gcaaaagggaagacgcagataccagccacaaaacctcactgggtgtctacgaaagaaaatccatctggtataggttcatccaaagcatttgcagcac |
11293604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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