View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13444_high_2 (Length: 420)
Name: NF13444_high_2
Description: NF13444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13444_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 40638471 - 40638094
Alignment:
| Q |
9 |
gagatgaagatctgtatggagcggatctacaccttgttaataacaaagcgtttttcggaggagtagaacaatttgaatttgaaacaatagcattatcaac |
108 |
Q |
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| T |
40638471 |
gagatgaagatctgtatggagcggatctacaccttgttaataacaaagcgtttttcggaggagtagaacaatttgaatttgaaacaatagcattatcaac |
40638372 |
T |
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| Q |
109 |
agattcaacactaacactaactctttgttcatcttctagggtgaaattactatttctgttagactctgatttaactgaatcttgtttaggtttagttggn |
208 |
Q |
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| T |
40638371 |
agattcaacactaacactaactctttgttcatcttctagggtgaaattactatttctgttagactctgatttaactgaatcttgtttaggtttagttggt |
40638272 |
T |
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| Q |
209 |
nnnnnnctacggaagaaagcccatttgggccaaacgggtcgacaacggcatgggttgggctttttaatccaccagtggtgtgtgggagtggtggaggatt |
308 |
Q |
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| T |
40638271 |
ttttttctacggaagaaagcccatttgggccaaacgagtcgacaacggcatgggttgggctttttaatccaccagtggtgtgtgggagtggtggaggatt |
40638172 |
T |
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| Q |
309 |
tggatgagctacgtttggctctgacttgacccatgcaagtgactttaggggaagaaggttcttgtgtagtttcaatgg |
386 |
Q |
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| T |
40638171 |
tggatgagctacgtttggctctgacttgacccatgcaagtgactttaggggaagaaggttcttgtgtagtttcaatgg |
40638094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 28675726 - 28675765
Alignment:
| Q |
332 |
acttgacccatgcaagtgactttaggggaagaaggttctt |
371 |
Q |
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| T |
28675726 |
acttgacccatgcaagtgactttaggggaagaaggttctt |
28675765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 27557161 - 27557100
Alignment:
| Q |
9 |
gagatgaagatctgtatggagcggatctacaccttgttaataacaaagcgtttttcggagga |
70 |
Q |
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||||||||||| ||||||| || |||||||||| |||||| |||||||||||||||||| |
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| T |
27557161 |
gagatgaagatttgtatggtgcagatctacaccgcgttaattggaaagcgtttttcggagga |
27557100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 45535940 - 45535879
Alignment:
| Q |
9 |
gagatgaagatctgtatggagcggatctacaccttgttaataacaaagcgtttttcggagga |
70 |
Q |
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| T |
45535940 |
gagatgaagatttgtatggtgcagatctacaccgcgttaattggaaagcgtttttcggagga |
45535879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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