View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13444_low_1 (Length: 483)
Name: NF13444_low_1
Description: NF13444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13444_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 67 - 472
Target Start/End: Complemental strand, 2725780 - 2725375
Alignment:
| Q |
67 |
gtgaattctgaaggcaagctgatttacacttcatggatgaataagcatcaagttggaacaactgttgctcaacaaaatgaatgtgatatttatggttttt |
166 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||| |
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| T |
2725780 |
gtgaattctgaaggcaagctggtttacacttcatggatgaatgggcatcaagttgggacaaccgttgttcaagaaaatgaatgtgatatttatggttttt |
2725681 |
T |
|
| Q |
167 |
gtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaatgtggatgaatggaatagacaaaattg |
266 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2725680 |
gtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaatgtggatgaatggaatagacaaaattg |
2725581 |
T |
|
| Q |
267 |
gataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggcaaaggagatggttttgtgaaactagag |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2725580 |
gataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggcaaaggagatggttttgtgaaactagag |
2725481 |
T |
|
| Q |
367 |
atgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgaatgcttgaataattgttcttgtgttgcttatgcatatg |
466 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2725480 |
atgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgagtgcttgaataattgttcttgtgttgcttatgcatatg |
2725381 |
T |
|
| Q |
467 |
atgatg |
472 |
Q |
| |
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|||||| |
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| T |
2725380 |
atgatg |
2725375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 2747309 - 2746884
Alignment:
| Q |
19 |
gagactacgtatacactgctaaatagttcnnnnnnngcaactgctgtggtgaattctgaaggcaagctgatttacacttcatggatgaataagcatcaag |
118 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747309 |
gagactacgtatacactgctaaatagttctttttttgcaactgctgtggtgaattctgaaggcaagctgatttacacttcatggatgaataagcatcaag |
2747210 |
T |
|
| Q |
119 |
ttggaacaactgttgctcaacaaaatgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgttt |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
2747209 |
ttggaacaactgttgctcaacaaaatgaatgtgatatttatggtttttgtggtcttaatggaaactgtgattcgacaaactcaccaatatgcacatgttt |
2747110 |
T |
|
| Q |
219 |
gaaaggttttgagccgcgaaatgtggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatac |
318 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
2747109 |
gacaggttttgagccgcgaaatgtggatgaatggaatagacaaaattggataagtgggtgtgtgagaaggacatcactgcagtgtgagagggtgaaatac |
2747010 |
T |
|
| Q |
319 |
aatggaagtgaattaggtggcaaaggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcatatctttttgctgatgcat |
418 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || |
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| T |
2747009 |
aatggaagtgaattaggcggcaaagaagatggttttgtgaagctagagatgacaaaaataccagattttgtacaacaatcatatctttttgttgatgaat |
2746910 |
T |
|
| Q |
419 |
gtagaactgaatgcttgaataattgt |
444 |
Q |
| |
|
||| |||| | ||||||||||||||| |
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|
| T |
2746909 |
gtaaaactcagtgcttgaataattgt |
2746884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 63 - 444
Target Start/End: Complemental strand, 2720391 - 2720010
Alignment:
| Q |
63 |
tgtggtgaattctgaaggcaagctgatttacacttcatggatgaataagcatcaagttggaacaactgttgctcaacaaaatgaatgtgatatttatggt |
162 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||| |||| | |||||||||| || | |||| ||||||||||||||||||| ||||||||| |
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|
| T |
2720391 |
tgtggtgagttctgaaggcaagctggtttacacttcatggatcaataggtatcaagttgggacgaatgttcctcaacaaaatgaatgtgacatttatggt |
2720292 |
T |
|
| Q |
163 |
ttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaatgtggatgaatggaatagacaaa |
262 |
Q |
| |
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| |||||||||||||||||| || ||| ||| || | ||||||||||||||||| ||||||||||||| |||||| || |||||||||| ||| | |
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| T |
2720291 |
tattgtggtcctaatggaagttgcgatttgaaaaatttgccaatatgcacatgtttagaaggttttgagccaaaaaatgtagacgaatggaataaacaga |
2720192 |
T |
|
| Q |
263 |
attggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggcaaaggagatggttttgtgaaact |
362 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| || || ||||||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
2720191 |
attggagtagtgggtgtgtgagaagggcatccctacaatgtgagagggtgaaatataatgggagtgcgttaggtggcaaaggagatgattttgtgaaact |
2720092 |
T |
|
| Q |
363 |
agagatgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgaatgcttgaataattgt |
444 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||| |||||||||| || | ||||||||||| |||| ||||||||||||||| |
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|
| T |
2720091 |
cgagacgacaaaagtaccagattttgtgcaacagtcatatctttctgttaatgcatgtagagctgagtgcttgaataattgt |
2720010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 135 - 468
Target Start/End: Complemental strand, 2709320 - 2708987
Alignment:
| Q |
135 |
tcaacaaaatgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccg |
234 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| || || |||||||| || ||||||| ||||||| |||| |
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|
| T |
2709320 |
tcaacaaaatgattgtgatgtttatggtatttgtggtcctaatggaagctgtgatttgaaaaattctccaatatgtacttgtttgataggttttaagcca |
2709221 |
T |
|
| Q |
235 |
cgaaatgtggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattag |
334 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||| |||||||||| ||||| ||| |||| || |||||||||| ||| |||||||| |||| ||||| |
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| T |
2709220 |
agaaacgtgggcgaatggaatagagaaaattggactagtgggtgtgtgagaagggctacactacaatgtgagagggggaagtacaatgggagtgcattag |
2709121 |
T |
|
| Q |
335 |
gtggcaaaggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgaatgctt |
434 |
Q |
| |
|
|| ||| ||| || ||| | |||||||||| |||||| ||||||||||||| |||||||||||| || | |||||| ||| ||| ||| ||||| |
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|
| T |
2709120 |
acggtgaagaagacgggtttctaaaactagagacgacaaaaccaccagattttgtagaacaatcatatccttctcttgatgcttgtcgaattgagtgctt |
2709021 |
T |
|
| Q |
435 |
gaataattgttcttgtgttgcttatgcatatgat |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2709020 |
gaataattgttcttgtgttgcttatgcatatgat |
2708987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 141 - 468
Target Start/End: Complemental strand, 2714349 - 2714022
Alignment:
| Q |
141 |
aaatgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaat |
240 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||||||||||||||| ||| | || ||||| || || ||||||| ||||||| |||| ||||| |
|
|
| T |
2714349 |
aaatgattgtgattcttatggtatttgtggtcctaatggaagctgtgatttgaaaatttctccaatttgtacttgtttgataggttttaagccaagaaat |
2714250 |
T |
|
| Q |
241 |
gtggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggca |
340 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||||||| ||||| |||| ||| |||||||| |||||||| |||| ||| |||| |||||||| |
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|
| T |
2714249 |
atggacaaatggaatagacgaaattggacaagtgggtgtgtgagaagggcagaactacagtgtgacagggtgaagtacagtgggagtgcattaggtg--- |
2714153 |
T |
|
| Q |
341 |
aaggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcata---tctttttgctgatgcatgtagaactgaatgcttgaa |
437 |
Q |
| |
|
||| ||| || ||| | |||||| ||||||||| ||| ||||||||| | | |||||| ||||| | ||| | |||||||| | | |||||||| |
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|
| T |
2714152 |
aagaagacggatttctaaaactaccgatgacaaaaccaccggattttgtagagccatcatatgttctttctcttgacgaatgtagaattcattgcttgaa |
2714053 |
T |
|
| Q |
438 |
taattgttcttgtgttgcttatgcatatgat |
468 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
2714052 |
taattgttcttgtgttgcttatgcatttgat |
2714022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 2733928 - 2733887
Alignment:
| Q |
148 |
tgtgatatttatggtttttgtggtcctaatggaagctgtgat |
189 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2733928 |
tgtgatgtttatggtttttgtggtcctaatgaaagctatgat |
2733887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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