View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13444_low_3 (Length: 353)

Name: NF13444_low_3
Description: NF13444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13444_low_3
NF13444_low_3
[»] chr3 (3 HSPs)
chr3 (7-329)||(2821553-2821875)
chr3 (189-274)||(48196786-48196871)
chr3 (216-306)||(46574483-46574573)
[»] chr1 (2 HSPs)
chr1 (189-274)||(23539739-23539823)
chr1 (144-273)||(40569674-40569804)
[»] chr5 (2 HSPs)
chr5 (189-274)||(16397967-16398052)
chr5 (35-149)||(7379937-7380048)
[»] chr8 (1 HSPs)
chr8 (229-307)||(10723775-10723853)
[»] chr2 (1 HSPs)
chr2 (45-149)||(15999232-15999333)
[»] scaffold0018 (1 HSPs)
scaffold0018 (147-244)||(32103-32200)
[»] chr4 (1 HSPs)
chr4 (108-185)||(42286518-42286593)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 2821553 - 2821875
Alignment:
Q  7 gaaaaaggaagtgtaagaatcatagaatatatcttatgatatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttat 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  2821553 gaaaaaggaagtgtaagaatcatagaatatatcttataatatctttaatattgtattagagtatcggaagttatttcctgcaattagtttataaccttat 2821652  T
Q  107 aagagtatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtt 206  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821653 aagagcatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtt 2821752  T
Q  207 tagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaaca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  2821753 tagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattcttatctttaaaatcccacaacttcaaca 2821852  T
Q  307 aaggtcttgtatagtttcatctc 329  Q
    |||||||||||||||||||||||    
T  2821853 aaggtcttgtatagtttcatctc 2821875  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 48196786 - 48196871
Alignment:
Q  189 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 274  Q
    |||| ||||||| | |||||| |||| ||||||| |||| ||| ||||| ||| ||||| |||| |||||||||||||||||||||    
T  48196786 taaacagggattagggtttagtcttttgtatcaacctactatcgagtcaatataaataatattccaggttcttattattttctctc 48196871  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 46574483 - 46574573
Alignment:
Q  216 gtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaaca 306  Q
    |||||||| ||| ||  ||||||||||||||  ||||||||||||||||||  ||||| ||| |||| | |||| |  |||||||||||||    
T  46574483 gtatcaaagtactattcagtcagtatcaatactattcaaggttcttattatcatctcttattcttttatctaaattctcacaacttcaaca 46574573  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 23539739 - 23539823
Alignment:
Q  189 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 274  Q
    |||||||||||| | ||||||||||| | ||||| |||| ||||||||| ||||||||| |||||| | |||||||||||||||||    
T  23539739 taaatagggattagggtttagccttttggatcaagctactatcaagtca-tatcaataatattcaaaggtcttattattttctctc 23539823  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 273
Target Start/End: Original strand, 40569674 - 40569804
Alignment:
Q  144 tattatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatca 243  Q
    |||| |||||||||||||||||| | |||| |  || |||| || |||||||||||| |  || ||  ||| ||||||| |||| ||  || ||||||||    
T  40569674 tattttgatttgttcttgatttaggattgagtccgtgtatcgctataaatagggattagaattgagttttttgtatcaagctactattcagccagtatca 40569773  T
Q  244 ataacatt-caaggttcttattattttctct 273  Q
    |||||||| | ||||||||||||||||||||    
T  40569774 ataacattccgaggttcttattattttctct 40569804  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 16398052 - 16397967
Alignment:
Q  189 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 274  Q
    |||||||||||| || ||||| |||||| ||||| |||| ||  | | |||||||| || |||||||||| |||||||||||||||    
T  16398052 taaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattcaaggtttttattattttctctc 16397967  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 7379937 - 7380048
Alignment:
Q  35 atatcttatgatatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttat 134  Q
    ||||||||| ||| |||||||||| ||||||| ||||  ||||||||||||   ||||||||| || |||   ||||||||| || |||||| | |||||    
T  7379937 atatcttataataactttaatattatattagaatatcttaagttatttcctagaattagtttacaatctt---agagtatctattgggattaaattttat 7380033  T
Q  135 atatcttaatattat 149  Q
    ||  |||| ||||||    
T  7380034 attacttattattat 7380048  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 10723853 - 10723775
Alignment:
Q  229 atcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaacaa 307  Q
    ||||||| | ||||||||| |||||| ||||||||||||||||||| |   ||| | ||||||| ||||| ||||||||    
T  10723853 atcaagttattatcaataatattcaaagttcttattattttctctcgtccatttatctaaaattgcacaatttcaacaa 10723775  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 15999333 - 15999232
Alignment:
Q  45 atatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaat 144  Q
    |||||||  ||||| ||||| ||||||  ||||||| || | |||||||||||||| ||||   ||||||||||||||||| || |||||||  |||| |    
T  15999333 atatcttcgatattatattaaagtatcttaagttatgtcatatgattagtttataatctta---gagtatctcttaggatttgattttatattacttatt 15999237  T
Q  145 attat 149  Q
    |||||    
T  15999236 attat 15999232  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 32103 - 32200
Alignment:
Q  147 tatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaa 244  Q
    |||||||||||||||||| | | |||| | | | ||||||| |||||||||||| || || ||  ||| ||||||| |||| ||||||||| ||||||    
T  32103 tatgatttgttcttgattcatgattgagtctatgtatccctataaatagggattagtattcagttttttgtatcaacctactatcaagtcattatcaa 32200  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 42286593 - 42286518
Alignment:
Q  108 agagtatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatcc 185  Q
    ||||||||||||||||| |||||||| || | ||| |||| ||||||| |||||||||||| |||| ||||| |||||    
T  42286593 agagtatctcttaggatcagagttta-at-tgttattattttgatttggtcttgatttaagattgagtttgtgtatcc 42286518  T

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