View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13444_low_4 (Length: 203)

Name: NF13444_low_4
Description: NF13444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13444_low_4
NF13444_low_4
[»] chr7 (14 HSPs)
chr7 (1-186)||(20167785-20167970)
chr7 (27-186)||(20273985-20274144)
chr7 (33-186)||(20289430-20289583)
chr7 (28-184)||(20231738-20231894)
chr7 (28-184)||(20243810-20243966)
chr7 (33-186)||(20285119-20285270)
chr7 (33-186)||(20294836-20294989)
chr7 (25-184)||(20264197-20264356)
chr7 (28-168)||(20279695-20279835)
chr7 (66-186)||(20062329-20062449)
chr7 (28-186)||(20303877-20304035)
chr7 (36-186)||(20005104-20005254)
chr7 (75-186)||(19939311-19939422)
chr7 (75-186)||(19970450-19970561)
[»] chr4 (2 HSPs)
chr4 (33-166)||(40823568-40823701)
chr4 (102-145)||(31708590-31708633)
[»] chr2 (5 HSPs)
chr2 (116-186)||(2704305-2704375)
chr2 (116-184)||(2716872-2716940)
chr2 (116-186)||(2711955-2712025)
chr2 (116-184)||(2723495-2723563)
chr2 (116-184)||(2745325-2745393)
[»] chr8 (2 HSPs)
chr8 (123-160)||(15703512-15703549)
chr8 (117-169)||(4159639-4159691)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 20167785 - 20167970
Alignment:
Q  1 aaggccataattgagccaaagtgtgtttgttaaggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggt 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20167785 aaggccataattgagccaaaatgtgtttgttaaggcttacatatcccaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctcccggt 20167884  T
Q  101 aataatctctagtatcaaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacatat 186  Q
    || |||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  20167885 aacaatctctaatatcaaaacaccaaagctaaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatat 20167970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 20274144 - 20273985
Alignment:
Q  27 ttgttaaggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaa 126  Q
    ||||| |||||||||||||||||||||||||||  |||| |||  ||||||||||||||||| ||| | ||||||| ||||||||| |||||||||||||    
T  20274144 ttgttgaggcttacatatcctaaaaggctcagattatgtgcatcctcgtaaaaacttgagtttcttttcccggtaagaatctctaggatcaaaacaccaa 20274045  T
Q  127 agctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacatat 186  Q
    |||||||||||||||  ||||| |||||||||||||||||||| || || ||||||||||    
T  20274044 agctaaaaacatctgtcttctcggaaaataatccttgcattgcatattcaggagacatat 20273985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 20289583 - 20289430
Alignment:
Q  33 aggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaagctaa 132  Q
    ||||||||| ||||||||||| |||| ||||| ||||| || ||||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||||    
T  20289583 aggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctcccgctaataatctctagtaacaaaacaccaaagctaa 20289484  T
Q  133 aaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacatat 186  Q
    | |||||||||||||||||||| | ||||||||||||||| |||||||| ||||    
T  20289483 agacatctgatttctctgaaaacagtccttgcattgcgtattcgggagatatat 20289430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 20231894 - 20231738
Alignment:
Q  28 tgttaaggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaa 127  Q
    |||| |||||||||||||||||||||||||||  |||  |||  || |||||||||||||| ||||| ||| ||| ||||||||||| ||| ||||||||    
T  20231894 tgttgaggcttacatatcctaaaaggctcagattatgcacatcgtcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaa 20231795  T
Q  128 gctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacat 184  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||||    
T  20231794 gctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacat 20231738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 20243966 - 20243810
Alignment:
Q  28 tgttaaggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaa 127  Q
    |||| ||||||||||||||||||||||| |||  ||| ||||  || |||||||||||||| ||||| ||| ||| ||||||||||| ||| ||||||||    
T  20243966 tgttgaggcttacatatcctaaaaggctaagattatgctcatcatcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaa 20243867  T
Q  128 gctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacat 184  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||||    
T  20243866 gctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacat 20243810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 20285270 - 20285119
Alignment:
Q  33 aggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaagctaa 132  Q
    |||| |||| |||||||||||||||||  ||| ||||| || ||||||| |||||||||||| || |||| |||||||||||||||||||||||| ||||    
T  20285270 aggcgtacaaatcctaaaaggctcaga--atgctcattgtcataaaaacatgagttccttctcccagtaacaatctctagtatcaaaacaccaaaactaa 20285173  T
Q  133 aaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacatat 186  Q
    ||| ||||||||||||||||||||||||||||||||| || || ||||||||||    
T  20285172 aaaaatctgatttctctgaaaataatccttgcattgcatattccggagacatat 20285119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 20294989 - 20294836
Alignment:
Q  33 aggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaagctaa 132  Q
    ||||||||| |||||| |||| |||||| ||  |||   || |||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  20294989 aggcttacaaatcctataagggtcagagaattctcaaagtcataaaaaattgagttccttctcccggtaacaatctctagcatcaaaacaccaaagctaa 20294890  T
Q  133 aaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacatat 186  Q
    ||||||||||||||||||||||||||||||||||||| || || ||||||||||    
T  20294889 aaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatat 20294836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 20264356 - 20264197
Alignment:
Q  25 gtttgttaaggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacacc 124  Q
    ||||||| ||||||||| |||||||||| || |||  ||| ||||  || |||||||||||||| ||||| ||| ||| ||||||||||| ||| |||||    
T  20264356 gtttgttgaggcttacaaatcctaaaagactaagattatgctcatcatcataaaaacttgagtttcttctcccgataacaatctctagtagcaatacacc 20264257  T
Q  125 aaagctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacat 184  Q
    |||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||    
T  20264256 aaagctaaaaacatctgacttctctgaaaataatccttgcattgcatattcgggagacat 20264197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 20279835 - 20279695
Alignment:
Q  28 tgttaaggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaa 127  Q
    |||||| ||||||| |||||| ||| ||||||||||| ||||| || ||||| |||||||| ||||| ||| |||  |||||||||| ||||||||||||    
T  20279835 tgttaatgcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaacgatctctagtaccaaaacaccaaa 20279736  T
Q  128 gctaaaaacatctgatttctctgaaaataatccttgcattg 168  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  20279735 gctaaaaacatctgatttctctgaaaaaagtccttgcattg 20279695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 20062329 - 20062449
Alignment:
Q  66 tcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgca 165  Q
    ||||| || ||||| |||||||| ||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  20062329 tcattgtcataaaagcttgagtttcttctcccagtaagaatctcaagtatcaaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgca 20062428  T
Q  166 ttgcgtactcgggagacatat 186  Q
    ||||||| || ||||||||||    
T  20062429 ttgcgtattcaggagacatat 20062449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 20304035 - 20303877
Alignment:
Q  28 tgttaaggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaa 127  Q
    ||||||| |||||| |||||| ||| ||| | ||||| ||||| || ||||| |||||||| ||||| ||  |||  |||||||| ||||| ||||||||    
T  20304035 tgttaagtcttacaaatcctagaagactcggtgcatgctcattgtcataaaagcttgagtttcttctcccactaacgatctctagaatcaatacaccaaa 20303936  T
Q  128 gctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacatat 186  Q
    ||||||||||||||||||||||||||| | |||| |||||||||| || ||||||||||    
T  20303935 gctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatat 20303877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 20005104 - 20005254
Alignment:
Q  36 cttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaagctaaaaa 135  Q
    |||||| ||||||| ||  |||||| || ||||| ||| ||||| |||||||| | ||| ||  ||| |||||||| || |||||| |||||||| || |    
T  20005104 cttacaaatcctaagagagtcagagaattttcatgttcataaaagcttgagtttcgtcttccactaacaatctctattagcaaaactccaaagctgaaga 20005203  T
Q  136 catctgatttctctgaaaataatccttgcattgcgtactcgggagacatat 186  Q
    | |||||||| || ||||||| |||||||||||| ||||| |||| |||||    
T  20005204 cgtctgatttatccgaaaatactccttgcattgcatactctggagccatat 20005254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 19939422 - 19939311
Alignment:
Q  75 taaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcgtact 174  Q
    ||||| ||||| || ||||| ||  |||||||||| || |  ||||| ||||||||||| ||||| ||||| || ||||| | |||||||||||| || |    
T  19939422 taaaagcttgaatttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatatt 19939323  T
Q  175 cgggagacatat 186  Q
    | ||||||||||    
T  19939322 ctggagacatat 19939311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 19970561 - 19970450
Alignment:
Q  75 taaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcgtact 174  Q
    ||||| ||||| || ||||| ||  |||||||||| || |  ||||| ||||||||||| ||||| ||||| || ||||| | |||||||||||| || |    
T  19970561 taaaagcttgaatttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatatt 19970462  T
Q  175 cgggagacatat 186  Q
    | ||||||||||    
T  19970461 ctggagacatat 19970450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 40823568 - 40823701
Alignment:
Q  33 aggcttacatatcctaaaaggctcagagcatgttcattttcgtaaaaacttgagttccttctgccggtaataatctctagtatcaaaacaccaaagctaa 132  Q
    ||||||||| ||||||||||| |||| ||||| ||||| || ||||| |||||||| ||||| ||  |||||||||||||||||||||||||||||||||    
T  40823568 aggcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaatcttgagtttcttctcccactaataatctctagtatcaaaacaccaaagctaa 40823667  T
Q  133 aaacatctgatttctctgaaaataatccttgcat 166  Q
    | |||||||||||||||||||| | |||||||||    
T  40823668 agacatctgatttctctgaaaacagtccttgcat 40823701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 31708633 - 31708590
Alignment:
Q  102 ataatctctagtatcaaaacaccaaagctaaaaacatctgattt 145  Q
    |||||||||||||  |||||||||||||| ||||||||||||||    
T  31708633 ataatctctagtagtaaaacaccaaagctgaaaacatctgattt 31708590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 2704305 - 2704375
Alignment:
Q  116 caaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacatat 186  Q
    |||||| |||||||||||||||||||||||||||||||| || || | ||||||||| || ||||||||||    
T  2704305 caaaaccccaaagctaaaaacatctgatttctctgaaaacaacccctccattgcgtattctggagacatat 2704375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 2716872 - 2716940
Alignment:
Q  116 caaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacat 184  Q
    |||||| ||||| ||||| |||||||||||||||||||| ||||||| |||||| || || ||||||||    
T  2716872 caaaaccccaaaactaaatacatctgatttctctgaaaacaatccttccattgcatattccggagacat 2716940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 2711955 - 2712025
Alignment:
Q  116 caaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacatat 186  Q
    |||||| ||||| ||||||| |||||||||||||||||| || |||| |||||| || || ||||||||||    
T  2711955 caaaactccaaaactaaaaatatctgatttctctgaaaacaaccctttcattgcatattctggagacatat 2712025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 2723495 - 2723563
Alignment:
Q  116 caaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacat 184  Q
    |||||| ||||| ||||| |||||||||||||||||||| |  |||| |||||| || || ||||||||    
T  2723495 caaaaccccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacat 2723563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 2745325 - 2745393
Alignment:
Q  116 caaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcgtactcgggagacat 184  Q
    |||||| ||||| ||||| |||||||||||||||||||| |  |||| |||||| || || ||||||||    
T  2745325 caaaaccccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacat 2745393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 15703512 - 15703549
Alignment:
Q  123 ccaaagctaaaaacatctgatttctctgaaaataatcc 160  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  15703512 ccaaagctaaaaacatcagatttcactgaaaataatcc 15703549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 4159639 - 4159691
Alignment:
Q  117 aaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgc 169  Q
    ||||| ||||||||| |||||||||||||||| ||||| | ||||| ||||||    
T  4159639 aaaactccaaagctataaacatctgatttctcagaaaaaagtccttccattgc 4159691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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