View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13445_high_3 (Length: 229)
Name: NF13445_high_3
Description: NF13445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13445_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 40059755 - 40059545
Alignment:
| Q |
1 |
taaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059755 |
taaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcaca |
40059656 |
T |
|
| Q |
101 |
aatttcactaaatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaaccttacagtagatcaacac |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059655 |
aatttcactaaatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaaccttacagtagatcaacac |
40059556 |
T |
|
| Q |
201 |
catgtttggat |
211 |
Q |
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||||||||||| |
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| T |
40059555 |
catgtttggat |
40059545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 40077827 - 40077652
Alignment:
| Q |
11 |
accaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaatttcacta |
110 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
40077827 |
accaaactttacccgtagttccattcagcacacacatatggaccgatccggagatgcacatatagtcctgcctcagccactgcctttacaaatttcacta |
40077728 |
T |
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| Q |
111 |
aatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaacctta |
186 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40077727 |
aatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaattataatagtctttctaacctta |
40077652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 40085632 - 40085432
Alignment:
| Q |
11 |
accaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaatttcacta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| || |||||||| ||||| |||||||||||||| | |
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| T |
40085632 |
accaaactttacccatagttccattcagaacaaacatatggaccaatccggagatgcacatatagacctgcctcagctactgctttcacaaatttcacca |
40085533 |
T |
|
| Q |
111 |
aatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaaccttacagtagatcaacaccatgtttgga |
210 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| | |||| |||||||||| | ||| |||||| |
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| T |
40085532 |
aatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaattaagatagactttcttagcttatagtagatcaagatcatatttgga |
40085433 |
T |
|
| Q |
211 |
t |
211 |
Q |
| |
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| |
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| T |
40085432 |
t |
40085432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 22015825 - 22015910
Alignment:
| Q |
18 |
tttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaat |
103 |
Q |
| |
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||||||| || |||||||||||||| |||||||||||||| |||||||||||||||| || || | || ||||||||||||||| |
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| T |
22015825 |
tttacccgtaattccattcagcacacacatatggaccgatccggagatgcacatataaacctgctgctgctactgccttcacaaat |
22015910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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