View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13445_low_1 (Length: 706)

Name: NF13445_low_1
Description: NF13445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13445_low_1
NF13445_low_1
[»] chr2 (1 HSPs)
chr2 (20-685)||(6917081-6917756)


Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 20 - 685
Target Start/End: Original strand, 6917081 - 6917756
Alignment:
Q  20 agtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcattcacggcggcgacagtgaagtct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6917081 agtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcattcacggcggcgacagtgaagtct 6917180  T
Q  120 ccgttgaaccgccttcattagtcaaagctcg-------ccattgacagcaccccgagtttcccatggacacgctcagagattgatcctgaagccgcagca 212  Q
    |||   |||||||||||||||||||||||||       ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  6917181 ccgccaaaccgccttcattagtcaaagctcgagcagcgccattgacagcacgccgagtttcccacagacacgctcagagattgatcctgaagccgcagca 6917280  T
Q  213 gtttgagacgagtccgctcccgtatctggcaatcagtttgagctgtgctgtgctcgtggaagcctagccgcccaggaga--ccgcccaagaatt-atctg 309  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| ||||| |||||||||  ||||||||||||| |||||    
T  6917281 gtttgagacgagtctgctcccgtatctggcaaacagtttgagctgtgccatgctcgtggaagcgtagccacccaggagaggccgcccaagaattgatctg 6917380  T
Q  310 aagccgtgttcgttcccggcaacagttgagcccaacgagaacacacaccagttctgcaacaggaaacaggtactatccggagacgagtttgaagccggga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6917381 aagccgtgttcgttcccggcaacagttgagcccaacgagaacacacaccagttctgcaacagggaacaggtactatccggagacgagtttgaagccggga 6917480  T
Q  410 gcacttcgctccccatacagaggtcacaactgtccagaaaggcaagttccaggccatcaagattgagcgcggcgaggttgattccgaaacatataggttc 509  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6917481 gcacttcgctccccatacagaggtcacaactgtccagaatggcaagttccaggccatcaagattgagcgcggcgaggttgatttcgaaacatataggttc 6917580  T
Q  510 tgattttccttttgcttgttgtttgagcacactcaatataaaatgctaaatgcacagacttattattcaataataatattgatcacaaacactcagtttc 609  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6917581 tgattttccatttgcttgttgtttgagcacactcaatataaaatgctaaatgcacagacttattattcaataataatattgatcacaaacactcagtttc 6917680  T
Q  610 cactaagagatggtgcagggccaagtgataagtaatttttgcactatttgatgactgttcttggcacacatgcatg 685  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6917681 cactaagagatggtgcagggccaagtgataagtaatttttgcactatttgatgactgttcttggcacatatgcatg 6917756  T

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