View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13445_low_2 (Length: 495)
Name: NF13445_low_2
Description: NF13445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13445_low_2 |
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| [»] scaffold1155 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 266 - 476
Target Start/End: Complemental strand, 55504706 - 55504496
Alignment:
| Q |
266 |
aggttggagaatctatgaaagagacgaaggaggaaagggcgggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgtt |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55504706 |
aggttggagaatctatgaaagagacgaaggaggaaagggcgggttgaattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgtt |
55504607 |
T |
|
| Q |
366 |
ttgagaccatggatacagccttcaggtagctacaattgttgtcatcgtccctgtcgctgctgaggagtttgaggatatactgccaacactcatcgggtaa |
465 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55504606 |
ttgagaccatggatacagccttcaggtagctataattgttgtcgtcgttcctgtcgctgctgaggagtttgaggatatactgccaacactcatcaggtaa |
55504507 |
T |
|
| Q |
466 |
atatgaatctg |
476 |
Q |
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||||||||||| |
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| T |
55504506 |
atatgaatctg |
55504496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 277 - 476
Target Start/End: Complemental strand, 55505069 - 55504870
Alignment:
| Q |
277 |
tctatgaaagagacgaaggaggaaagggcgggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagaccatg |
376 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55505069 |
tctatgaaagagacgaaggaggaaagggcgggttgaattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagaccatg |
55504970 |
T |
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| Q |
377 |
gatacagccttcaggtagctacaattgttgtcatcgtccctgtcgctgctgaggagtttgaggatatactgccaacactcatcgggtaaatatgaatctg |
476 |
Q |
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| T |
55504969 |
gatacagccttcaggtagctacaattgttgtcgtcgttcctgtcgctgctgaggagtttgaggatatactgccaacactcatcaggtaaatatgaatctg |
55504870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 548226 - 548299
Alignment:
| Q |
299 |
aaagggcgggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagac |
372 |
Q |
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|||||||| ||| |||||||||| |||||||||| | |||||| |||| |||| |||| |||||||||||||| |
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| T |
548226 |
aaagggcgtgtttgattatagactgtgagtgagagtggaagattattggtgatggagagaaactgttttgagac |
548299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 340
Target Start/End: Complemental strand, 21833226 - 21833081
Alignment:
| Q |
195 |
atgggaaacgagagatttcacggagaagtacgttgagatcaccgtggtagaatgaaaggtcaagtgaagtaaggttggagaatctatgaaagagacgaag |
294 |
Q |
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|||||||||||||||||| ||||||||| |||||| ||||||||| || || |||| ||| || |||||||||| |||||| | ||||| || | |
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| T |
21833226 |
atgggaaacgagagatttgacggagaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtgaatcttttgaagaggggacg |
21833127 |
T |
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| Q |
295 |
gaggaaagggcgggttggattatagacagtgagtgagaatcgaaga |
340 |
Q |
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|| || |||||| |||||||| |||||| ||||| ||||||||| |
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| T |
21833126 |
gatgagagggcgtgttggattgaggacagtcagtgataatcgaaga |
21833081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 1874 - 1797
Alignment:
| Q |
156 |
tgggttggttggagatattgagtgatgtgaggaggctgaatgggaaacgagagatttcacggagaagtacgttgagatcac |
236 |
Q |
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||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| |||| || |||||||| |||| |
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| T |
1874 |
tgggttggtaggagagattgagtgatgtgaggt---tcaatgggaaacgagagatttcatggagtagcacgttgaggtcac |
1797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 8342 - 8419
Alignment:
| Q |
156 |
tgggttggttggagatattgagtgatgtgaggaggctgaatgggaaacgagagatttcacggagaagtacgttgagatcac |
236 |
Q |
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||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| |||| || |||||||| |||| |
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| T |
8342 |
tgggttggtaggagagattgagtgatgtgaggt---tcaatgggaaacgagagatttcatggagtagcacgttgaggtcac |
8419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 30637 - 30560
Alignment:
| Q |
156 |
tgggttggttggagatattgagtgatgtgaggaggctgaatgggaaacgagagatttcacggagaagtacgttgagatcac |
236 |
Q |
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||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| |||| || |||||||| |||| |
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| T |
30637 |
tgggttggtaggagagattgagtgatgtgaggt---tcaatgggaaacgagagatttcatggagtagcacgttgaggtcac |
30560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 8913478 - 8913378
Alignment:
| Q |
83 |
ttggaacaaatgagagatgtcaaagtagttttaatccttttagacaaagcttgcaaccccttagcaggtatggtgggttggttggagatattgagtgatg |
182 |
Q |
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||||||||| ||||||| |||||||| || |||| ||||||| ||| || ||||||| |||||||| | ||| |||||||||||||||||| |||| |
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| T |
8913478 |
ttggaacaattgagagaggtcaaagttgt---aatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatg |
8913382 |
T |
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| Q |
183 |
tgag |
186 |
Q |
| |
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|||| |
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| T |
8913381 |
tgag |
8913378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 513525 - 513447
Alignment:
| Q |
294 |
ggaggaaagggcgggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagac |
372 |
Q |
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||||||||||| ||||| || || ||||||||| |||||||| |||| ||| |||| |||| ||||||||||||||| |
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| T |
513525 |
ggaggaaagggagggtttgaatacggacagtgagagagaatcggagattgttggtgatggagagtaactgttttgagac |
513447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 32268750 - 32268822
Alignment:
| Q |
306 |
gggttggattatagacagtgagtgagaatcgaagatcattgatgatcgagaataactgttttgagaccatgga |
378 |
Q |
| |
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||||||||| |||||| ||||| |||||||||||| ||| |||| |||| ||||||||| ||||| ||||| |
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| T |
32268750 |
gggttggatcatagactgtgagagagaatcgaagacggttggtgatggagagtaactgtttggagacgatgga |
32268822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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