View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13445_low_4 (Length: 297)

Name: NF13445_low_4
Description: NF13445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13445_low_4
NF13445_low_4
[»] chr1 (19 HSPs)
chr1 (22-281)||(9085826-9086082)
chr1 (1-279)||(9069509-9069784)
chr1 (24-277)||(9125000-9125250)
chr1 (22-281)||(8861423-8861676)
chr1 (116-269)||(8978911-8979064)
chr1 (122-263)||(9236124-9236265)
chr1 (122-247)||(9377984-9378109)
chr1 (122-242)||(9300365-9300485)
chr1 (122-226)||(8927238-8927342)
chr1 (187-262)||(9106248-9106321)
chr1 (122-226)||(8939664-8939768)
chr1 (122-268)||(9337783-9337929)
chr1 (122-259)||(9364651-9364788)
chr1 (120-181)||(9495610-9495671)
chr1 (147-264)||(10930800-10930917)
chr1 (122-226)||(9242256-9242360)
chr1 (122-182)||(9466450-9466510)
chr1 (147-264)||(11041163-11041280)
chr1 (22-74)||(9106093-9106145)
[»] scaffold0690 (1 HSPs)
scaffold0690 (122-226)||(1893-1997)
[»] chr6 (5 HSPs)
chr6 (122-226)||(15910109-15910213)
chr6 (126-181)||(31229945-31230000)
chr6 (126-178)||(31145371-31145423)
chr6 (126-178)||(31171684-31171736)
chr6 (126-178)||(31189429-31189481)
[»] chr3 (1 HSPs)
chr3 (152-244)||(9171772-9171864)
[»] chr7 (1 HSPs)
chr7 (122-190)||(31541037-31541105)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 9085826 - 9086082
Alignment:
Q  22 cttcatcttcaatatttatatgtatgtctccttccaacaaattatgaatccattctgggtatagaatatggaaagtttctgcagatgatgatgagtctac 121  Q
    |||| ||||||||||| |||| ||||||||||||||| ||||||| |||||||||| |||||| | |||||||||||||||||||||   ||||||||||    
T  9085826 cttcgtcttcaatattcatatatatgtctccttccaataaattataaatccattctcggtataaactatggaaagtttctgcagatg---atgagtctac 9085922  T
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9085923 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacattcccaaaatttcgtgacaaaacttcaggc 9086022  T
Q  222 gccatatatcccaaggttcctctagcagctgtcatggacactacactaatattcttggaa 281  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9086023 gccatatatcccaaggttcccctagcagctgtcatggacactacactaatattcttggaa 9086082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 9069509 - 9069784
Alignment:
Q  1 ttgcaattttaacattgctagcttcatcttcaatatttatatgtatgtctccttccaacaaattatgaatccattctgggtatagaatatggaaagtttc 100  Q
    ||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| || |||||||||||||| ||||||| || ||| |||  |||    
T  9069509 ttgcaattttagcattgccaacttcatcttcaacatttatatgtatgtctccttccaataagttatgaatccattccgggtataaaacatgcaaatcttc 9069608  T
Q  101 tgcagatgatgatgagtctacattcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaa 200  Q
    ||||||||| ||    ||||||||||| ||||| |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  9069609 tgcagatgacgaa---tctacattctttcttcctccaaccatttctagcaacaacattccataactgtatatatcagacttaagagaaacatttccaaaa 9069705  T
Q  201 tttcgtgacaaaacttcaggcgccatatatcccaaggttcctctagcagctgtcatggacactacactaatattcttgg 279  Q
    ||||| ||||  ||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  9069706 tttcgagacactacttcgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttgg 9069784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 277
Target Start/End: Original strand, 9125000 - 9125250
Alignment:
Q  24 tcatcttcaatatttatatgtatgtctccttccaacaaattatgaatccattctgggtatagaatatggaaagtttctgcagatgatgatgagtctacat 123  Q
    ||||||||||||||||||||| | ||||||||||| |  ||||||||||||||||| |||| || ||||||| ||||  ||||  | ||    |||||||    
T  9125000 tcatcttcaatatttatatgtgtatctccttccaataggttatgaatccattctggatataaaacatggaaattttcatcagacaaggaa---tctacat 9125096  T
Q  124 tcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgc 223  Q
    |||| | ||| |||||||  || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  9125097 tcttgcgtcctccaaccaattccagcaacaacatcccataactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggtgc 9125196  T
Q  224 catatatcccaaggttcctctagcagctgtcatggacactacactaatattctt 277  Q
    |||||||||||||||||||||||| || |||||||| || ||||||| ||||||    
T  9125197 catatatcccaaggttcctctagccgcagtcatggatacaacactaacattctt 9125250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 8861423 - 8861676
Alignment:
Q  22 cttcatcttcaatatttatatgtatgtctccttccaacaaattatgaatccattctgggtatagaatatggaaagtttctgcagatgatgatgagtctac 121  Q
    ||||||| |||||||  |||  ||| ||||||||||| || ||||| ||||||||||||||||| | ||| |||||||||||||| |       ||||||    
T  8861423 cttcatcctcaatatggatacttatatctccttccaataagttatggatccattctgggtatagcacatgaaaagtttctgcagacgt------gtctac 8861516  T
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| || || |||||||| |||||||||||||| || ||||| |||||||| ||||||||||| ||||| |||||||||| ||| | ||||||||||    
T  8861517 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagacacattcccaaaatttcttgatagaacttcaggc 8861616  T
Q  222 gccatatatcccaaggttcctctagcagctgtcatggacactacactaatattcttggaa 281  Q
    ||||| ||||||||||||||  ||||||||||||||||||| || |||| ||||||||||    
T  8861617 gccatgtatcccaaggttcccttagcagctgtcatggacacaacgctaagattcttggaa 8861676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 8978911 - 8979064
Alignment:
Q  116 gtctacattcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaact 215  Q
    ||||| ||||||||||||  ||||||| |||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||||||| ||||| ||||    
T  8978911 gtctatattcttccttcctgcaaccatttctagcaacaacattccatagctataaatatcagatttaagagacacattaccaaaatttcttgacagaact 8979010  T
Q  216 tcaggcgccatatatcccaaggttcctctagcagctgtcatggacactacacta 269  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||||||||||    
T  8979011 tcaggtgccatatatcccaaggtacccctagccgctgtcatggacactacacta 8979064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 263
Target Start/End: Original strand, 9236124 - 9236265
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||||  |||||||||||| || ||||  || |||||||||||     
T  9236124 attctttcttccaccaaccatctcaagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggt 9236223  T
Q  222 gccatatatcccaaggttcctctagcagctgtcatggacact 263  Q
    || || ||||||||||||||||| || || ||||| ||||||    
T  9236224 gcaatgtatcccaaggttcctctcgctgcagtcatagacact 9236265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 247
Target Start/End: Complemental strand, 9378109 - 9377984
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| || || |||||||||||||||||||| || || || |||||||||||||||||   |||||||||||| || |||| ||| |||||||||||     
T  9378109 attctttctacctccaaccatctctagcaacaatattccgtagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggt 9378010  T
Q  222 gccatatatcccaaggttcctctagc 247  Q
    || || || ||||| |||||||||||    
T  9378009 gcaatgtagcccaatgttcctctagc 9377984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 9300485 - 9300365
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||  ||| ||||| ||||| ||||  || |||||||| ||     
T  9300485 attcttccttcccccaaccatctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggt 9300386  T
Q  222 gccatatatcccaaggttcct 242  Q
    ||||| ||||| || ||||||    
T  9300385 gccatgtatcctaatgttcct 9300365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 8927342 - 8927238
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| ||||| ||||||||||||||||||||||| || || || || ||||||||||||  ||| ||||| ||||| ||||| || |||||||||||     
T  8927342 attctttcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8927243  T
Q  222 gccat 226  Q
    |||||    
T  8927242 gccat 8927238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 9106248 - 9106321
Alignment:
Q  187 aaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcctctagcagctgtcatggacac 262  Q
    ||||||||||||||||| |||||||  |||| ||||||||||||||||||||| |||||||| | || ||||||||    
T  9106248 aaacatttccaaaattttgtgacaa--cttctggcgccatatatcccaaggtttctctagcatcggtaatggacac 9106321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 8939768 - 8939664
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| ||||| ||||||||||| |||| |||||| || || || || ||||||||||||  ||| ||||| ||||| ||||| || |||||||||||     
T  8939768 attctttcttcctccaaccatctccagcagcaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8939669  T
Q  222 gccat 226  Q
    |||||    
T  8939668 gccat 8939664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 268
Target Start/End: Complemental strand, 9337929 - 9337783
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| ||||| |||||||| || | ||| ||||| || ||||| || ||||||||||||  ||| ||||| ||||| |||| ||| |||||||||||     
T  9337929 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9337830  T
Q  222 gccatatatcccaaggttcctctagcagctgtcatggacactacact 268  Q
    ||||| || || || |||||  |||| || |||||||| || |||||    
T  9337829 gccatgtagcctaatgttcccttagctgcagtcatggatacgacact 9337783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 9364788 - 9364651
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| ||||| |||||||| || | ||| ||||| || ||||| || ||||||||||||  ||| ||||| ||||| |||| ||| |||||||||||     
T  9364788 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9364689  T
Q  222 gccatatatcccaaggttcctctagcagctgtcatgga 259  Q
    ||||| || || || |||||  |||| || ||||||||    
T  9364688 gccatgtagcctaatgttcccttagctgcagtcatgga 9364651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 9495671 - 9495610
Alignment:
Q  120 acattcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagactt 181  Q
    |||||||  ||||| || |||||||||||||||||||| ||| ||||||||| |||||||||    
T  9495671 acattctgtcttcccccgaccatctctagcaacaacattccaaaactataaacatcagactt 9495610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 10930917 - 10930800
Alignment:
Q  147 agcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcctctag 246  Q
    ||||||| ||| ||||||||||||| ||| || ||   ||| ||||||||||| || | ||| |||||||| || || || || ||||| ||||||||||    
T  10930917 agcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgagaaaacttctggagcaatgtagcccaaagttcctctag 10930818  T
Q  247 cagctgtcatggacacta 264  Q
    | |||||||| |||||||    
T  10930817 ctgctgtcattgacacta 10930800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 9242256 - 9242360
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| ||||| ||||||||||| | ||| ||||| || ||||| || | ||| ||||||  ||| ||||||||||||||||  || |||||||||||     
T  9242256 attctttcttcctccaaccatctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 9242355  T
Q  222 gccat 226  Q
    |||||    
T  9242356 gccat 9242360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 9466450 - 9466510
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagactta 182  Q
    |||||| |||||  |||||||||| | ||||||||| ||||||||||| ||||||||||||    
T  9466450 attctttcttcctgcaaccatctccaacaacaacataccataactatatatatcagactta 9466510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 11041280 - 11041163
Alignment:
Q  147 agcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcctctag 246  Q
    ||||||| ||| ||||||||||||| ||| || || | ||| || |||||||| || | ||| |||||||| || || || || ||||| ||||||||||    
T  11041280 agcaacatcattccataactataaacatccgatttgaaagacacgtttccaaagttccttgaaaaaacttctggagcaatgtagcccaaagttcctctag 11041181  T
Q  247 cagctgtcatggacacta 264  Q
    | || ||||| |||||||    
T  11041180 ccgcggtcattgacacta 11041163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 9106093 - 9106145
Alignment:
Q  22 cttcatcttcaatatttatatgtatgtctccttccaacaaattatgaatccat 74  Q
    ||||| ||||||||||||||| || ||||| |||||| || ||||||||||||    
T  9106093 cttcaccttcaatatttatatatacgtctctttccaataagttatgaatccat 9106145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 1997 - 1893
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| ||||| ||||||||||| | ||| ||||| || ||||| || ||||| ||||||  ||| ||||||||||||||||  || |||||||||||     
T  1997 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 1898  T
Q  222 gccat 226  Q
    |||||    
T  1897 gccat 1893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 15910109 - 15910213
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggc 221  Q
    |||||| ||||| ||||||||||| | ||| ||||| || ||||| || ||||| ||||||  ||| ||||||||||||||||  || |||||||||||     
T  15910109 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 15910208  T
Q  222 gccat 226  Q
    |||||    
T  15910209 gccat 15910213  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 31230000 - 31229945
Alignment:
Q  126 ttccttccaccaaccatctctagcaacaacatcccataactataaatatcagactt 181  Q
    ||||| ||||||||||| |||||||||| ||| |||||||||||||  ||||||||    
T  31230000 ttcctcccaccaaccatttctagcaacatcattccataactataaacgtcagactt 31229945  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 31145371 - 31145423
Alignment:
Q  126 ttccttccaccaaccatctctagcaacaacatcccataactataaatatcaga 178  Q
    ||||| || |||||||| |||||||||| ||| ||||||||||||| ||||||    
T  31145371 ttcctccctccaaccatttctagcaacatcattccataactataaacatcaga 31145423  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 31171684 - 31171736
Alignment:
Q  126 ttccttccaccaaccatctctagcaacaacatcccataactataaatatcaga 178  Q
    ||||| || |||||||| |||||||||| ||| ||||||||||||| ||||||    
T  31171684 ttcctccctccaaccatttctagcaacatcattccataactataaacatcaga 31171736  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 31189429 - 31189481
Alignment:
Q  126 ttccttccaccaaccatctctagcaacaacatcccataactataaatatcaga 178  Q
    ||||| ||||||||||| || ||||||| ||| ||||||||||||| ||||||    
T  31189429 ttcctcccaccaaccatttccagcaacatcattccataactataaacatcaga 31189481  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 9171864 - 9171772
Alignment:
Q  152 caacatcccataactataaatatcagacttaagagaaacatttccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcctct 244  Q
    |||||| ||||| ||||| ||||||||||||  ||| ||||| ||||||||||  || |||||||| || ||||| ||||| || ||||||||    
T  9171864 caacataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctct 9171772  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 31541037 - 31541105
Alignment:
Q  122 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaac 190  Q
    |||||| ||||| |||||||| ||||| |  ||||| ||||||||||| | |||||||||| |||||||    
T  31541037 attctttcttcccccaaccatttctagaattaacataccataactatatacatcagacttatgagaaac 31541105  T

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