View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13446_high_5 (Length: 272)
Name: NF13446_high_5
Description: NF13446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13446_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 1629944 - 1630160
Alignment:
| Q |
18 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatg----taagaaagcctcaagt |
113 |
Q |
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| T |
1629944 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagt |
1630043 |
T |
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| Q |
114 |
ataatttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctg |
213 |
Q |
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| T |
1630044 |
ataatttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctg |
1630143 |
T |
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| Q |
214 |
ttgcagagctataagtg |
230 |
Q |
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| T |
1630144 |
ttgcagagctataagtg |
1630160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 10820754 - 10820598
Alignment:
| Q |
18 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatgtaagaaagcctcaagtataa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||| ||| ||||| |
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| T |
10820754 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaa----atatgaaagtaattgtaggtaagaaagccacaattataa |
10820659 |
T |
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| Q |
118 |
tttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaa |
178 |
Q |
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| T |
10820658 |
tttaaatattataaacctatcttagtataaaattttagaacttcaaaatataaaataaaaa |
10820598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 1606646 - 1606689
Alignment:
| Q |
18 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
61 |
Q |
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| T |
1606646 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
1606689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 10820160 - 10820119
Alignment:
| Q |
189 |
gagatggaatataactcacctgctgttgcagagctataagtg |
230 |
Q |
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| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtg |
10820119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 1607121 - 1607164
Alignment:
| Q |
187 |
aggagatggaatataactcacctgctgttgcagagctataagtg |
230 |
Q |
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| T |
1607121 |
aggaaatgaaatataattcacctgctgttgcagagctataagtg |
1607164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 1624142 - 1624185
Alignment:
| Q |
187 |
aggagatggaatataactcacctgctgttgcagagctataagtg |
230 |
Q |
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|||| ||| ||||||| ||||||||||||||||||||||||||| |
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| T |
1624142 |
aggaaatgaaatataattcacctgctgttgcagagctataagtg |
1624185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 18785179 - 18785211
Alignment:
| Q |
198 |
tataactcacctgctgttgcagagctataagtg |
230 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
18785179 |
tataattcacctgctgttgcagagctataagtg |
18785211 |
T |
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