View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13446_low_1 (Length: 681)
Name: NF13446_low_1
Description: NF13446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13446_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 375
Target Start/End: Complemental strand, 36837196 - 36836838
Alignment:
| Q |
12 |
tcatcaaaggagaagcgatgacgagatcgatcttgttaattaatccggaggaatgaacatgtttacgcaaattatcaacctgttcccatccaagaggagt |
111 |
Q |
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| T |
36837196 |
tcatcaaaggagaagcgatgacgagatcgatcttgttaattaatccggaggaatgaacatgtttacgcaaattatcaacctgttcccatccaagaggagt |
36837097 |
T |
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| Q |
112 |
aagatgggcatcaaaataatcaggattcaaatacgctttgtagtttttgtctccttccacattgtggatcccttgagcgtgtctcacaaggtgaatcgtt |
211 |
Q |
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| T |
36837096 |
aagatgggcatcaaaataatcaggattcaaatacgctttgtagtttttgtctccttccacattgtggatcccttgagcgtgtctcacaaggtgaatcgtt |
36836997 |
T |
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| Q |
212 |
ttgcaacgatgtaacggaaacaaacacgtgccggcaccgcaatccatattgttctgaatctgataaacacagagtcaacggttgaattaggaacgaataa |
311 |
Q |
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| T |
36836996 |
ttgcaacgatgtaacggaaacaaacacgtgccggcaccgcaatccatattgttctgaatctgataaacacagagtcaacggttgaattaggaacgaataa |
36836897 |
T |
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| Q |
312 |
acgaatatcagaattgaagaaggtgcacgcaacgtaacgtaacgtaccgtagcagtagcagatc |
375 |
Q |
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| T |
36836896 |
acgaatatcagaattgaagaaggtgcacgcaacgtaa-----cgtaccgtagcagtagcagatc |
36836838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 399 - 508
Target Start/End: Original strand, 37850762 - 37850871
Alignment:
| Q |
399 |
atgttggagtgtttatttaattggtgaatcgttgcttccaccgtcgcctcttcattgtgctgtaaggtctgctgacggagctttcttggttggtcgtcgt |
498 |
Q |
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| T |
37850762 |
atgttggagtgtttatttaattggtgaatcgttgcttccaccgtcgcctcttcattgtgctgtaaggtctgctgacggagctttcttggttggtcgtcgt |
37850861 |
T |
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| Q |
499 |
atcgtccttc |
508 |
Q |
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| T |
37850862 |
atcgtccttc |
37850871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 615 - 663
Target Start/End: Original strand, 37850944 - 37850992
Alignment:
| Q |
615 |
ttactttcgacttttccacctttataaattctgatgctgcgtgggcggt |
663 |
Q |
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| T |
37850944 |
ttactttcgacttttccacctttataaattctgatgctgcgtgggcggt |
37850992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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