View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13446_low_2 (Length: 571)
Name: NF13446_low_2
Description: NF13446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13446_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 328
Target Start/End: Original strand, 2022175 - 2022488
Alignment:
| Q |
15 |
gaaaagaaacaaatataggatgggaaacataaaacataaaacaatgccaaatgaatttagcaaagttacaattaaggaagaggtggaaagatgattccat |
114 |
Q |
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| T |
2022175 |
gaaaagaaacaaatataggatgggaaacataaaacataaaacaatgccaaatgaatttagcaaagttacaattaaggaagcggtggaaagatgattccat |
2022274 |
T |
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| Q |
115 |
gttgaagccacaaagactgcacatggaaggaagttgacgtcctcttctggctagagtttcattagtagataacttatcatctaagcttctccaaagaatg |
214 |
Q |
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| T |
2022275 |
gttggagccacaaagactgcacatggaaggaagttgacgtcctcttctggctagagtttcattagtagataacttatcatctaagcttctccaaagaatg |
2022374 |
T |
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| Q |
215 |
aaaggttctccattagtaggtaacctatatgccaaataagctttgcccaactggtattttggtctaaataatcgccatgaatatcataagcatccttgaa |
314 |
Q |
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| T |
2022375 |
aaaggttctccattagtaggtaacctatatgccaaataagctttgcccaactggtattttggtctaaataatcaccatgaaaatcataagcatccttgaa |
2022474 |
T |
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| Q |
315 |
agagagatgaccat |
328 |
Q |
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|||||||||||||| |
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| T |
2022475 |
agagagatgaccat |
2022488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 388 - 553
Target Start/End: Original strand, 2022496 - 2022662
Alignment:
| Q |
388 |
atcatagattgaagaatggataagcatgcataatacgacatggaaagatccatcttgagattgagagagctcctaacaaagtttcaaatttgttgcttca |
487 |
Q |
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| T |
2022496 |
atcatagattgaagaatggataagcatgcataatacgacatggaaagatccatcttgagattgagagagctcctaacaaagtttcaaatttgttgcttca |
2022595 |
T |
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| Q |
488 |
ttaatttgtcacaaagatttgatgcctaaaccatttgttggaacttgtgtt-ggggtctgctgcaat |
553 |
Q |
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| T |
2022596 |
ttaatttgtcacaaagatttgatgcctaaaccatttgttggaacttgtgttgggggtctgctgcaat |
2022662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 28341619 - 28341777
Alignment:
| Q |
59 |
tgccaaatgaatttagcaaagttacaattaaggaagaggtggaaagatgattccatgttgaagccacaaagactgcacatggaagg-aagttgacgtcct |
157 |
Q |
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|||||||| ||||||||| ||||||||| || ||| ||||| | ||| ||||| || ||| ||||||||| | ||||||| || || |||||| | |||| |
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| T |
28341619 |
tgccaaataaatttagcatagttacaatcaaagaaaaggtgaagagaggattctatattggagccacaaaaattgcacatagatgggaagttg-catcct |
28341717 |
T |
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| Q |
158 |
cttctggctagagtttcattagtagataacttatcatctaagcttctccaaagaatgaaag |
218 |
Q |
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| T |
28341718 |
cttctgg-taaagtttcatcagtaggtagcttgtcatggaagctttgccaaagaatgaaag |
28341777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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