View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13446_low_7 (Length: 217)
Name: NF13446_low_7
Description: NF13446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13446_low_7 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1629749 - 1629965
Alignment:
| Q |
1 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629749 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
1629848 |
T |
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| Q |
101 |
accgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629849 |
accgatagaaaactgagagatcggacgctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaa |
1629948 |
T |
|
| Q |
201 |
gtgaagtccatcaatac |
217 |
Q |
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||||||||||||||||| |
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| T |
1629949 |
gtgaagtccatcaatac |
1629965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1606451 - 1606667
Alignment:
| Q |
1 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606451 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
1606550 |
T |
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| Q |
101 |
accgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaa |
200 |
Q |
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| T |
1606551 |
accgatagaaaactgagagatcggaggctgatcttagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaa |
1606650 |
T |
|
| Q |
201 |
gtgaagtccatcaatac |
217 |
Q |
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||||||||||||||||| |
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| T |
1606651 |
gtgaagtccatcaatac |
1606667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10820949 - 10820733
Alignment:
| Q |
1 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||| | || |
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| T |
10820949 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtac |
10820850 |
T |
|
| Q |
101 |
accgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaa |
200 |
Q |
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|||| ||||| || |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10820849 |
accggtagaagacggagagatcagaggctgatcggagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaa |
10820750 |
T |
|
| Q |
201 |
gtgaagtccatcaatac |
217 |
Q |
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||||||||||||||||| |
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| T |
10820749 |
gtgaagtccatcaatac |
10820733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1623573 - 1623787
Alignment:
| Q |
1 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
1623573 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcac |
1623672 |
T |
|
| Q |
101 |
accgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaa |
200 |
Q |
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|||||||||| || ||||||||||||||||||| |||||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||||||||| |
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| T |
1623673 |
accgatagaagacagagagatcggaggctgatcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaa |
1623772 |
T |
|
| Q |
201 |
gtgaagtccatcaat |
215 |
Q |
| |
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|||||||||||||| |
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| T |
1623773 |
atgaagtccatcaat |
1623787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 18781267 - 18781481
Alignment:
| Q |
1 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| || || ||||| |||| |
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| T |
18781267 |
ttgccaaagataaagtcgacggtgccatagatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcac |
18781366 |
T |
|
| Q |
101 |
accgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaa |
200 |
Q |
| |
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|||||||||| || ||||||||||||||||||| ||||||||||||||||| || || ||||| || |||||||||||||||||||| || |||||||| |
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| T |
18781367 |
accgatagaagacagagagatcggaggctgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaa |
18781466 |
T |
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| Q |
201 |
gtgaagtccatcaat |
215 |
Q |
| |
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|||||||||||||| |
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| T |
18781467 |
atgaagtccatcaat |
18781481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 12802833 - 12803047
Alignment:
| Q |
1 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | |||| || ||||||||||||||||| ||| |||| || |||||||| || ||| | || || |
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| T |
12802833 |
ttgccaaagatgaagtcaacggtgccatagatgtaacattctctgtaaaattgacgttgtgcgtgaaccatgagggtgtcttggtagcctttaaaggaac |
12802932 |
T |
|
| Q |
101 |
accgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaa |
200 |
Q |
| |
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| || ||||| || || || || |||||||||| |||||||| |||||||| |||| || || || |||| || || ||||| ||||||||||| |
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| T |
12802933 |
aacggtagaagacagataggtcagaggctgatcgaagcgccactgcttgaccacgacgtggtccagccgtgttttcaaaagtaatgtcacgtgcaatgaa |
12803032 |
T |
|
| Q |
201 |
gtgaagtccatcaat |
215 |
Q |
| |
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|||||| |||||||| |
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| T |
12803033 |
gtgaagaccatcaat |
12803047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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