View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13448_high_2 (Length: 232)

Name: NF13448_high_2
Description: NF13448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13448_high_2
NF13448_high_2
[»] chr7 (8 HSPs)
chr7 (153-216)||(3991364-3991430)
chr7 (119-154)||(25481887-25481922)
chr7 (181-216)||(29763131-29763166)
chr7 (181-216)||(35862033-35862068)
chr7 (182-216)||(5409773-5409807)
chr7 (117-154)||(24105661-24105698)
chr7 (153-216)||(28155610-28155671)
chr7 (184-216)||(30813882-30813914)
[»] chr6 (10 HSPs)
chr6 (153-205)||(9911495-9911547)
chr6 (181-216)||(4878024-4878059)
chr6 (182-216)||(17327592-17327626)
chr6 (117-154)||(3398602-3398639)
chr6 (117-154)||(12696307-12696344)
chr6 (183-216)||(17841531-17841564)
chr6 (117-154)||(17841628-17841665)
chr6 (117-154)||(34595117-34595154)
chr6 (184-216)||(7723201-7723233)
chr6 (107-147)||(27904084-27904124)
[»] chr5 (18 HSPs)
chr5 (153-216)||(10298609-10298667)
chr5 (117-154)||(15382460-15382497)
chr5 (182-218)||(23015924-23015960)
chr5 (106-154)||(39698513-39698561)
chr5 (182-216)||(14873605-14873639)
chr5 (182-216)||(17123130-17123164)
chr5 (182-216)||(21190998-21191032)
chr5 (182-216)||(21576687-21576721)
chr5 (182-216)||(22423766-22423800)
chr5 (182-216)||(35017126-35017160)
chr5 (182-216)||(43001888-43001922)
chr5 (117-154)||(14674252-14674289)
chr5 (182-215)||(39268541-39268574)
chr5 (183-216)||(39698636-39698669)
chr5 (182-214)||(4105342-4105374)
chr5 (118-154)||(8420011-8420047)
chr5 (180-216)||(24906254-24906290)
chr5 (181-217)||(41995546-41995582)
[»] chr1 (12 HSPs)
chr1 (153-216)||(2218279-2218345)
chr1 (181-217)||(16297222-16297258)
chr1 (153-216)||(28663648-28663714)
chr1 (182-216)||(22947813-22947847)
chr1 (182-216)||(35702544-35702578)
chr1 (182-216)||(37598914-37598948)
chr1 (182-216)||(42359391-42359425)
chr1 (182-216)||(47989591-47989625)
chr1 (117-154)||(18556495-18556532)
chr1 (183-216)||(21365994-21366027)
chr1 (183-216)||(22515829-22515862)
chr1 (117-154)||(46348422-46348459)
[»] chr4 (13 HSPs)
chr4 (178-216)||(22440559-22440597)
chr4 (117-154)||(23293025-23293062)
chr4 (182-216)||(715547-715581)
chr4 (182-216)||(752873-752907)
chr4 (182-216)||(4383449-4383483)
chr4 (182-216)||(5775306-5775340)
chr4 (182-216)||(23292928-23292962)
chr4 (183-216)||(3064870-3064903)
chr4 (182-215)||(28084607-28084640)
chr4 (117-154)||(30298929-30298966)
chr4 (117-154)||(30327797-30327834)
chr4 (98-154)||(22234930-22234986)
chr4 (118-154)||(49431009-49431045)
[»] scaffold0223 (1 HSPs)
scaffold0223 (117-154)||(20155-20192)
[»] scaffold0009 (1 HSPs)
scaffold0009 (157-208)||(188455-188509)
[»] chr8 (8 HSPs)
chr8 (114-154)||(25192386-25192426)
chr8 (107-154)||(15816168-15816215)
chr8 (182-216)||(17751739-17751773)
chr8 (182-216)||(17760726-17760760)
chr8 (113-154)||(5813571-5813612)
chr8 (117-154)||(22651959-22651996)
chr8 (117-154)||(29510343-29510380)
chr8 (183-216)||(31514938-31514971)
[»] scaffold0793 (1 HSPs)
scaffold0793 (182-216)||(4823-4857)
[»] scaffold0475 (1 HSPs)
scaffold0475 (182-216)||(3391-3425)
[»] scaffold0004 (2 HSPs)
scaffold0004 (106-152)||(92779-92825)
scaffold0004 (182-216)||(92905-92939)
[»] chr3 (9 HSPs)
chr3 (182-216)||(4990914-4990948)
chr3 (182-216)||(20503548-20503582)
chr3 (182-216)||(34185054-34185088)
chr3 (117-154)||(3865595-3865632)
chr3 (183-216)||(8789490-8789523)
chr3 (183-216)||(8842413-8842446)
chr3 (117-154)||(10318073-10318110)
chr3 (117-154)||(15796333-15796370)
chr3 (183-216)||(55401159-55401192)
[»] chr2 (5 HSPs)
chr2 (182-216)||(2438661-2438695)
chr2 (182-216)||(26769605-26769639)
chr2 (182-216)||(37419837-37419871)
chr2 (117-154)||(19536437-19536474)
chr2 (117-145)||(28596455-28596483)
[»] scaffold0103 (1 HSPs)
scaffold0103 (117-154)||(51794-51831)
[»] scaffold0053 (1 HSPs)
scaffold0053 (117-154)||(8781-8818)
[»] scaffold0027 (2 HSPs)
scaffold0027 (117-154)||(46665-46702)
scaffold0027 (183-216)||(46741-46774)


Alignment Details
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 3991364 - 3991430
Alignment:
Q  153 aattacaagtgtcggtgtcg---tatcgactaggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||    
T  3991364 aattacaagtgtcggtgtcgtcgtatcgactgggacacgcctaatccgaggagtgtccgggcttcat 3991430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 25481887 - 25481922
Alignment:
Q  119 ggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||||||||||||||||||||||||| ||||||    
T  25481887 ggacaatgacacgccgacacagctaataatttgaaa 25481922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 29763166 - 29763131
Alignment:
Q  181 aggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||||| |||||||    
T  29763166 aggacacgcctaatccgaggagtgtccgtgcttcat 29763131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 35862033 - 35862068
Alignment:
Q  181 aggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||||| |||||||    
T  35862033 aggacacgcctaatccgaggagtgtccgtgcttcat 35862068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 5409807 - 5409773
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  5409807 ggacacgcctaatccgaggagtgtccgtgcttcat 5409773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 24105661 - 24105698
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  24105661 acggacactgacacgccgacacagctaataatttgaaa 24105698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 28155610 - 28155671
Alignment:
Q  153 aattacaagtgtcggtgtcgtatcgactaggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||| |   || |||||||||||||||| |||| |||||| |||||||    
T  28155610 aattacaagtgtcggtgtcggac--accaggacacgcctaatccaaggaatgtccgtgcttcat 28155671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 30813882 - 30813914
Alignment:
Q  184 acacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||| |||||||    
T  30813882 acacgcctaatccgaggagtgtccgtgcttcat 30813914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 9911547 - 9911495
Alignment:
Q  153 aattacaagtgtcggtgtcgtatcgactaggacacgcctaatccgaggagtgt 205  Q
    ||||||||||||||||||||| || || |||||||||||||||||||||||||    
T  9911547 aattacaagtgtcggtgtcgtgtcaaccaggacacgcctaatccgaggagtgt 9911495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 4878024 - 4878059
Alignment:
Q  181 aggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||||| |||||||    
T  4878024 aggacacgcctaatccgaggagtgtccgtgcttcat 4878059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 17327626 - 17327592
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  17327626 ggacacgcctaatccgaggagtgtccgtgcttcat 17327592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 3398602 - 3398639
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  3398602 acggacactgacacgccgacacagctaataatttgaaa 3398639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 12696307 - 12696344
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  12696307 acggacactgacacgccgacacagctaataatttgaaa 12696344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 17841564 - 17841531
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  17841564 gacacgcctaatccgaggagtgtccgtgcttcat 17841531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 17841665 - 17841628
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  17841665 acggacactgacacgccgacacagctaataatttgaaa 17841628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 34595117 - 34595154
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  34595117 acggacaatgacacgccgacacaactaataatttgaaa 34595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 7723233 - 7723201
Alignment:
Q  184 acacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||| |||||||    
T  7723233 acacgcctaatccgaggagtgtccgtgcttcat 7723201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 27904124 - 27904084
Alignment:
Q  107 aagcaaggatacggacaatgacacgccgacacagctaataa 147  Q
    ||||| ||||||||||| ||||||||||||| |||||||||    
T  27904124 aagcacggatacggacattgacacgccgacatagctaataa 27904084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 10298609 - 10298667
Alignment:
Q  153 aattacaagtgtcggtgtcgtatcgactaggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||     |||||||||||||||||||||||||| |||||||    
T  10298609 aattacaagtgtcggtgtcgtatcg-----gacacgcctaatccgaggagtgtccgtgcttcat 10298667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 15382460 - 15382497
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  15382460 acggacaatgacacgccgacacagctaataatttgaaa 15382497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 23015960 - 23015924
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcatct 218  Q
    ||||||||||||||||||||||||||| |||||||||    
T  23015960 ggacacgcctaatccgaggagtgtccgagcttcatct 23015924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 39698513 - 39698561
Alignment:
Q  106 gaagcaaggatacggacaatgacacgccgacacagctaataaattgaaa 154  Q
    |||||| ||||||||||| |||||||| |||||||||||||| ||||||    
T  39698513 gaagcacggatacggacactgacacgctgacacagctaataatttgaaa 39698561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 14873605 - 14873639
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  14873605 ggacacgcctaatccgaggagtgtccgtgcttcat 14873639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 17123130 - 17123164
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  17123130 ggacacgcctaatccgaggagtgtccgtgcttcat 17123164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 21191032 - 21190998
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  21191032 ggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 21576721 - 21576687
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  21576721 ggacacgcctaatccgaggagtgtccgtgcttcat 21576687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 22423800 - 22423766
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  22423800 ggacacgcctaatccgaggagtgtccgtgcttcat 22423766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 35017126 - 35017160
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  35017126 ggacacgcctaatccgaggagtgtccgtgcttcat 35017160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 43001888 - 43001922
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  43001888 ggacacgcctaatccgaggagtgtccgtgcttcat 43001922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 14674252 - 14674289
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  14674252 acggacactgacacgccgacacagctaataatttgaaa 14674289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 39268574 - 39268541
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttca 215  Q
    ||||||||||||||||||||||||||| ||||||    
T  39268574 ggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 39698636 - 39698669
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  39698636 gacacgcctaatccgaggagtgtccgtgcttcat 39698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 4105342 - 4105374
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttc 214  Q
    ||||||||||||||||||||||||||| |||||    
T  4105342 ggacacgcctaatccgaggagtgtccgtgcttc 4105374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 8420011 - 8420047
Alignment:
Q  118 cggacaatgacacgccgacacagctaataaattgaaa 154  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  8420011 cggacaatgacacgccgacatagctaataatttgaaa 8420047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 24906290 - 24906254
Alignment:
Q  180 taggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  24906290 taggacacgcctaattcgaggagtgtccgtgcttcat 24906254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 41995546 - 41995582
Alignment:
Q  181 aggacacgcctaatccgaggagtgtccgggcttcatc 217  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  41995546 aggacacgcctaatcctaggagtgtccgtgcttcatc 41995582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 2218279 - 2218345
Alignment:
Q  153 aattacaagtgtcggtgtcgtatcg---actaggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||| ||    |||||||||||||||||| |||||||||||| |||||||    
T  2218279 aattacaagtgtcggtgtcgtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcat 2218345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 16297258 - 16297222
Alignment:
Q  181 aggacacgcctaatccgaggagtgtccgggcttcatc 217  Q
    |||||||||||||||||||||||||||| ||||||||    
T  16297258 aggacacgcctaatccgaggagtgtccgtgcttcatc 16297222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 28663648 - 28663714
Alignment:
Q  153 aattacaagtgtcggtgtcgtatcga---ctaggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||   | || ||||||||||| ||||||||||| | |||||||    
T  28663648 aattacaagtgtcggtgtcgtatcgatatccagaacacgcctaattcgaggagtgtctgtgcttcat 28663714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 22947813 - 22947847
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  22947813 ggacacgcctaatccgaggagtgtccgtgcttcat 22947847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 35702578 - 35702544
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  35702578 ggacacgcctaatccgaggagtgtccgtgcttcat 35702544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 37598914 - 37598948
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  37598914 ggacacgcctaatccgaggagtgtccgtgcttcat 37598948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 42359425 - 42359391
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  42359425 ggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 47989591 - 47989625
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  47989591 ggacacgcctaatccgaggagtgtccgtgcttcat 47989625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 18556532 - 18556495
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  18556532 acggacactgacacgccgacacagctaataatttgaaa 18556495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 21366027 - 21365994
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  21366027 gacacgcctaatccgaggagtgtccgtgcttcat 21365994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 22515862 - 22515829
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  22515862 gacacgcctaatccgaggagtgtccgtgcttcat 22515829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 46348459 - 46348422
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  46348459 acggacactgacacgccgacacagctaataatttgaaa 46348422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 22440597 - 22440559
Alignment:
Q  178 actaggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  22440597 actaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 23293062 - 23293025
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  23293062 acggacaatgacacgccgacacagctaataatttgaaa 23293025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 715581 - 715547
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  715581 ggacacgcctaatccgaggagtgtccgtgcttcat 715547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 752907 - 752873
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  752907 ggacacgcctaatccgaggagtgtccgtgcttcat 752873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 4383449 - 4383483
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  4383449 ggacacgcctaatccgaggagtgtccgtgcttcat 4383483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 5775340 - 5775306
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  5775340 ggacacgcctaatccgaggagtgtccgtgcttcat 5775306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 23292962 - 23292928
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  23292962 ggacacgcctaatccgaggagtgtccgtgcttcat 23292928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 3064903 - 3064870
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  3064903 gacacgcctaatccgaggagtgtccgtgcttcat 3064870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 28084607 - 28084640
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttca 215  Q
    ||||||||||||||||||||||||||| ||||||    
T  28084607 ggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 30298929 - 30298966
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  30298929 acggacactgacacgccgacacagctaataatttgaaa 30298966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 30327797 - 30327834
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  30327797 acggacactgacacgccgacacagctaataatttgaaa 30327834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 22234986 - 22234930
Alignment:
Q  98 agacctacgaagcaaggatacggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| |||||| |||||||||||  ||||||||||||| ||||| || ||||||    
T  22234986 agacctatgaagcacggatacggacacggacacgccgacaccgctaaaaatttgaaa 22234930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 49431009 - 49431045
Alignment:
Q  118 cggacaatgacacgccgacacagctaataaattgaaa 154  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  49431009 cggacagtgacacgccgacacagctaataatttgaaa 49431045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 20155 - 20192
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  20155 acggacaatgacacgccgacacagctaataatttgaaa 20192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 188455 - 188509
Alignment:
Q  157 acaagtgtcggtgtcgtatcg---actaggacacgcctaatccgaggagtgtccg 208  Q
    ||||||||||||||||||||    || ||||||||||||||||||||||||||||    
T  188455 acaagtgtcggtgtcgtatccgacaccaggacacgcctaatccgaggagtgtccg 188509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 25192426 - 25192386
Alignment:
Q  114 gatacggacaatgacacgccgacacagctaataaattgaaa 154  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  25192426 gatacggacactgacacgccgacacagctaataatttgaaa 25192386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 15816215 - 15816168
Alignment:
Q  107 aagcaaggatacggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||| ||||||||||| ||||||||||||||| ||||||| ||||||    
T  15816215 aagcatggatacggacactgacacgccgacacaactaataatttgaaa 15816168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 17751739 - 17751773
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  17751739 ggacacgcctaatccgaggagtgtccgcgcttcat 17751773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 17760726 - 17760760
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  17760726 ggacacgcctaatccgaggagtgtccgcgcttcat 17760760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 5813571 - 5813612
Alignment:
Q  113 ggatacggacaatgacacgccgacacagctaataaattgaaa 154  Q
    |||||||||||  |||||||||||||||||||||| ||||||    
T  5813571 ggatacggacacggacacgccgacacagctaataatttgaaa 5813612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 22651959 - 22651996
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  22651959 acggacactgacacgccgacacagctaataatttgaaa 22651996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 29510380 - 29510343
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  29510380 acggacactgacacgccgacacagctaataatttgaaa 29510343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 31514938 - 31514971
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  31514938 gacacgcctaatccgaggagtgtccgtgcttcat 31514971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 4857 - 4823
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  4857 ggacacgcctaatccgaggagtgtccgtgcttcat 4823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 3391 - 3425
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  3391 ggacacgcctaatccgaggagtgtccgtgcttcat 3425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 92779 - 92825
Alignment:
Q  106 gaagcaaggatacggacaatgacacgccgacacagctaataaattga 152  Q
    |||||| ||||||||||| |||||||||||||| |||||||| ||||    
T  92779 gaagcacggatacggacactgacacgccgacaccgctaataatttga 92825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 92905 - 92939
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  92905 ggacacgcctaatccgaggagtgtccgtgcttcat 92939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 4990948 - 4990914
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  4990948 ggacacgcctaatccgaggagtgtccgtgcttcat 4990914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 20503548 - 20503582
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  20503548 ggacacgcctaatccgaggagtgtccgtgcttcat 20503582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 34185088 - 34185054
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  34185088 ggacacgcctaatccgaggagtgtccgtgcttcat 34185054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 3865632 - 3865595
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  3865632 acggacactgacacgccgacacagctaataatttgaaa 3865595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 8789523 - 8789490
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  8789523 gacacgcctaatccgaggagtgtccgtgcttcat 8789490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 8842413 - 8842446
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  8842413 gacacgcctaatccgaggagtgtccgtgcttcat 8842446  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 10318110 - 10318073
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  10318110 acggacactgacacgccgacacagctaataatttgaaa 10318073  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 15796370 - 15796333
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  15796370 acggacaatgacacgccgacacagttaataatttgaaa 15796333  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 55401159 - 55401192
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  55401159 gacacgcctaatccgaggagtgtccgtgcttcat 55401192  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 2438695 - 2438661
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  2438695 ggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 26769605 - 26769639
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  26769605 ggacacgcctaatccgaggagtgtccgtgcttcat 26769639  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 37419837 - 37419871
Alignment:
Q  182 ggacacgcctaatccgaggagtgtccgggcttcat 216  Q
    ||||||||||||||||||||||||||| |||||||    
T  37419837 ggacacgcctaatccgaggagtgtccgtgcttcat 37419871  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 19536474 - 19536437
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  19536474 acggacaatgacacgccgacacaactaataatttgaaa 19536437  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 28596455 - 28596483
Alignment:
Q  117 acggacaatgacacgccgacacagctaat 145  Q
    |||||||||||||||||||||||||||||    
T  28596455 acggacaatgacacgccgacacagctaat 28596483  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 51794 - 51831
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  51794 acggacactgacacgccgacacagctaataatttgaaa 51831  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 8781 - 8818
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  8781 acggacactgacacgccgacacagctaataatttgaaa 8818  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 46665 - 46702
Alignment:
Q  117 acggacaatgacacgccgacacagctaataaattgaaa 154  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  46665 acggacaatgacacgccgacacagttaataatttgaaa 46702  T

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Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 46741 - 46774
Alignment:
Q  183 gacacgcctaatccgaggagtgtccgggcttcat 216  Q
    |||||||||||||||||||||||||| |||||||    
T  46741 gacacgcctaatccgaggagtgtccgtgcttcat 46774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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