View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13448_low_1 (Length: 649)
Name: NF13448_low_1
Description: NF13448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13448_low_1 |
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| [»] scaffold0553 (2 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 11 - 633
Target Start/End: Complemental strand, 33102488 - 33101873
Alignment:
| Q |
11 |
gagtagcataggacatgtgaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataattttaattgaggtaatgacatcccccataaatat |
110 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
33102488 |
gagtaacataggacatgggaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataatattaattgaggta-tgacatccccg-taaatat |
33102391 |
T |
|
| Q |
111 |
aaacaaaatgaatgnnnnnnnnn--ttaggaggtaaatataagcatataatccacgatgctgtgcacaaaatattagtttgatgtgttttggtatccttc |
208 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33102390 |
aagcaaaatgaatggaaaaaaaaaattaggaggtaaatataagcatataatccacgatgctgtgcacaaaatattagcttgatgtgttttggtatccttc |
33102291 |
T |
|
| Q |
209 |
caaatttcagcaaatcactcgttctgatataatcactttataaattttctctaagatattcattcaattttgtttgatgtaatatgatacactacccgag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102290 |
caaatttcagcaaatcactcgttctgatataatcactttataaattttctctaagatattcattcaattttgtttgatgtaatatgatacactacccgag |
33102191 |
T |
|
| Q |
309 |
ggttgatttctttttctcatagaataaaacatttgaatggtattaaaggatacaacggaagacatgcataaaattgaaagatattaagttatagggatga |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102190 |
ggttgatttctttttctcatagaataaaacatttgaatggtattaaaggatacaatggaagacatgcataaaattgaaagatattaagttatagggatga |
33102091 |
T |
|
| Q |
409 |
tatttacgaaagaaaagaaatattcccagtttatttcggtactccgagtagcataatatttacgaaacaatatttttatgttgttttggtgagttctctt |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33102090 |
tatttacgaaagaaaagaaatattcccagtttatttcggtacttcgagtagcataat-------aaacaatatttttatgttgttttggtgagttctctt |
33101998 |
T |
|
| Q |
509 |
tgtgcagagagtagtcataattaagatctggagggttgatttatctttgaacaacgagattgaaaagagctgttgcactattgagacaaagctgcaaaat |
608 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33101997 |
tgtgcagagagtaatcataattaagatctggagggttgatttatccttgaacaacgaggttgaaaagagctgttgcactattgagacaaagccgcaaaat |
33101898 |
T |
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| Q |
609 |
atcttaaagtaagtgacctaaaatt |
633 |
Q |
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| T |
33101897 |
atcttaaagtaagtgacataaaatt |
33101873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 397 - 616
Target Start/End: Original strand, 33100453 - 33100665
Alignment:
| Q |
397 |
ttatagggatgatatttacgaaagaaaagaaatattcccagtttatttcggtactccgagtagcataatatttacgaaacaatatttttatgttgttttg |
496 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |||||| |||||| | ||||||||||||||||||||| |
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| T |
33100453 |
ttatagggatgatatttacaaaagaaaagaaatattctcagtttattttggtactctgagtagtataata-------agcaatatttttatgttgttttg |
33100545 |
T |
|
| Q |
497 |
gtgagttctctttgtgcagagagtagtcataattaagatctggagggttgatttatctttgaacaacgagattgaaaagagctgttgcactattgagaca |
596 |
Q |
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||||||| |||||||||||| | |||||||||||||||| |||||| ||| | |||| | ||||| |||| |||||||||| |||||||||||||||||| |
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| T |
33100546 |
gtgagttatctttgtgcagaaaatagtcataattaagatttggaggcttgctgtatcctagaacagcgaggttgaaaagaggtgttgcactattgagaca |
33100645 |
T |
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| Q |
597 |
aagctgcaaaatatcttaaa |
616 |
Q |
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|||| ||||||||||||||| |
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| T |
33100646 |
aagccgcaaaatatcttaaa |
33100665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 15603089 - 15603017
Alignment:
| Q |
29 |
gaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataattttaattgaggtaatgacatcccc |
101 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
15603089 |
gaatgttcaatcaggcgtgtttaatcaagggaatgggaagaggcataattttgattgaggcaatgacatcccc |
15603017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 15602783 - 15602711
Alignment:
| Q |
481 |
tttttatgttgttttggtgagttctctttgtgcagagagtagtcataattaagatctggagggttgatttatc |
553 |
Q |
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|||||||||||||||||||||| || ||| |||||||||||| |||||||||||| ||||| |||| |||||| |
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| T |
15602783 |
tttttatgttgttttggtgagtcctttttatgcagagagtagccataattaagatttggagagttgctttatc |
15602711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 527
Target Start/End: Original strand, 37411150 - 37411190
Alignment:
| Q |
487 |
tgttgttttggtgagttctctttgtgcagagagtagtcata |
527 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| ||||| |
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| T |
37411150 |
tgttgttttggtgagttctctttgtgaagagagtactcata |
37411190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 15602973 - 15602898
Alignment:
| Q |
139 |
aggtaaatataagcatataatccacgatgctgtgcaca-aaatattagtttgatgtgttttggtatccttccaaat |
213 |
Q |
| |
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|||||||||||||||||||||||| |||| ||| || | | |||||||||||||| |||||||||| || ||||| |
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| T |
15602973 |
aggtaaatataagcatataatccatgatgatgtacatagcagtattagtttgatgtcttttggtatcatttcaaat |
15602898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 533
Target Start/End: Complemental strand, 37075566 - 37075520
Alignment:
| Q |
487 |
tgttgttttggtgagttctctttgtgcagagagtagtcataattaag |
533 |
Q |
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||||| |||||||||||||||||||||| |||||| ||||| ||||| |
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| T |
37075566 |
tgttggtttggtgagttctctttgtgcatagagtactcatacttaag |
37075520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0553 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 7174 - 7103
Alignment:
| Q |
29 |
gaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataattttaattgaggtaatgacatccc |
100 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
7174 |
gaatgttcaatcaggcgtgtttaatcaagggaatgggaagaggcataattttgattgaggcaatgacatccc |
7103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0553; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 6909 - 6837
Alignment:
| Q |
481 |
tttttatgttgttttggtgagttctctttgtgcagagagtagtcataattaagatctggagggttgatttatc |
553 |
Q |
| |
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|||||||||||||||||||||||||| || || | |||||||||||||||||| |||||||||| |||||| |
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| T |
6909 |
tttttatgttgttttggtgagttctcattagacataaagtagtcataattaagatttggagggttgctttatc |
6837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 42118 - 42190
Alignment:
| Q |
29 |
gaatgtttaatcaggcgtgtggaatcaagggaatgggaagaggcataattttaattgaggtaatgacatcccc |
101 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||| |
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| T |
42118 |
gaatgttcaatcagacgtgtttaatcaagggaatgaaaagaggcataattttgattgaggcaatgacatcccc |
42190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 533
Target Start/End: Original strand, 12703801 - 12703847
Alignment:
| Q |
487 |
tgttgttttggtgagttctctttgtgcagagagtagtcataattaag |
533 |
Q |
| |
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||||| |||||||| |||||||||||||||||||| ||||| ||||| |
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| T |
12703801 |
tgttggtttggtgaattctctttgtgcagagagtattcatacttaag |
12703847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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