View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13448_low_2 (Length: 482)
Name: NF13448_low_2
Description: NF13448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13448_low_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 466
Target Start/End: Original strand, 28733163 - 28733617
Alignment:
| Q |
20 |
cttcccattcagaggtagtaagacacctaggaatataagtagtcctagtacaataattgggtggaggaaccagtataataaacaaatcattcattcatta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733163 |
cttcccattcagaggtagtaagacacctaggaatataagtagtcctagtacaataattgggtggaggaaccagtataataaacaaatcattcattcatta |
28733262 |
T |
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| Q |
120 |
aactcgtcatttgcattgatgacaaaagacnnnnnnnn--gtggcttaaagattatccttctgtcttcaatcaaatgaggctattgataaatttcaagac |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733263 |
aactcgtcatttgcattgatgacaaaagacaaaaaaaaaagtggcttaaagattatccttctgtcttcaatcaaatgaggctattgataaatttcaagac |
28733362 |
T |
|
| Q |
218 |
atgggaaactacaaattatatttacattacatgaagaaaatcatttatacatccattcgaataaaggagggattgcagccaagggaaagtctt-aaaaga |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28733363 |
atgggaaactacaaattatatttacattacaggaagaaaatcatttatacatccattcgaataaaggagggattgcagccaagggaaagtcttaaaaagg |
28733462 |
T |
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| Q |
317 |
taacaaaaaatgtgttggttctattgagcttgcctttaactactttgaagattaccatcctcataagtt-agccaaaaaatggagatgacccatattata |
415 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28733463 |
taacaaaaaatgtgttggttctattgagcttggctttaactactttgaagattaccatcctcataagttaagccaaaaaatggagatgacccatattata |
28733562 |
T |
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| Q |
416 |
caccgagtaatgcaaaaaaggagctcactt----ctaactgtctctttgattcat |
466 |
Q |
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| T |
28733563 |
caccgagtaatgcaaaaaaggagctcacttttaactaactgtctctttgattcat |
28733617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 28726348 - 28726476
Alignment:
| Q |
21 |
ttcccattcagaggtagtaagacacctaggaatataagtagtcctagtacaataattgggtggaggaaccagtataataaac-aaatcattcattcatta |
119 |
Q |
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||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||| |
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| T |
28726348 |
ttcccattcagaggtagtaagac-ctgaggaatacaactagtcctagtacaataattgggtcgaggaaccagtacaataaacaaaatctttgattcatta |
28726446 |
T |
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| Q |
120 |
aactcgtcatttgcattgatgacaaaagac |
149 |
Q |
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| T |
28726447 |
aactcatcatttgcattgatgacaatagac |
28726476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 28726515 - 28726601
Alignment:
| Q |
158 |
gtggcttaaagattatccttctgtcttcaatcaaatgaggctattgataaatttcaagacatgggaaactacaaattatatttacat |
244 |
Q |
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| T |
28726515 |
gtggcttaaagattatccttctatcttcaatcaaatgaggctactgataaatttcaagacatgggaaagtacacattatatttacat |
28726601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 45960811 - 45960763
Alignment:
| Q |
338 |
tattgagcttgcctttaactactttgaagattaccatcctcataagtta |
386 |
Q |
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| T |
45960811 |
tattgatcttgcttttaactactttgaagattattatcctcaaaagtta |
45960763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 29163583 - 29163534
Alignment:
| Q |
169 |
attatccttctgtcttcaatcaaatgaggctattgataaatttcaagaca |
218 |
Q |
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| T |
29163583 |
attatccttctatcttcaatcaattgaggctattgatagatttcaggaca |
29163534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 29163249 - 29163197
Alignment:
| Q |
257 |
atcatttatacatccattcgaataaaggagggattgcagccaagggaaagtct |
309 |
Q |
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||||||||||||| |||| ||||||| |||| ||||||| ||| ||||||||| |
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| T |
29163249 |
atcatttatacattcattggaataaatgaggaattgcagtcaaaggaaagtct |
29163197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 298235 - 298299
Alignment:
| Q |
322 |
aaaaatgtgttggttctattgagcttgcctttaactactttgaagattaccatcctcataagtta |
386 |
Q |
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| T |
298235 |
aaaattgtgttagttttattgatcttgcttttaactactttgaagtttattatcctcaaaagtta |
298299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 142849 - 142913
Alignment:
| Q |
322 |
aaaaatgtgttggttctattgagcttgcctttaactactttgaagattaccatcctcataagtta |
386 |
Q |
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|||| |||||| ||| |||||| ||||| ||||| |||||||||||||| ||||||| |||||| |
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| T |
142849 |
aaaattgtgttagttttattgatcttgcttttaaatactttgaagattattatcctcaaaagtta |
142913 |
T |
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