View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13449_low_1 (Length: 372)

Name: NF13449_low_1
Description: NF13449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13449_low_1
NF13449_low_1
[»] chr8 (14 HSPs)
chr8 (208-346)||(6266944-6267082)
chr8 (44-174)||(3435285-3435415)
chr8 (118-178)||(3648889-3648949)
chr8 (112-176)||(16788114-16788178)
chr8 (112-206)||(23402091-23402186)
chr8 (118-176)||(4404022-4404080)
chr8 (112-176)||(34136914-34136978)
chr8 (112-206)||(2729285-2729380)
chr8 (118-176)||(36408565-36408623)
chr8 (126-176)||(39914529-39914579)
chr8 (126-176)||(29728489-29728539)
chr8 (112-168)||(9877242-9877298)
chr8 (112-167)||(40470582-40470637)
chr8 (118-180)||(10397135-10397197)
[»] chr1 (11 HSPs)
chr1 (44-206)||(41972296-41972458)
chr1 (120-176)||(35907566-35907622)
chr1 (44-98)||(33489779-33489833)
chr1 (125-175)||(42311043-42311093)
chr1 (118-176)||(7433459-7433517)
chr1 (126-176)||(26144269-26144319)
chr1 (118-176)||(32982151-32982209)
chr1 (127-176)||(3828998-3829047)
chr1 (125-206)||(48901207-48901288)
chr1 (112-176)||(17445327-17445391)
chr1 (118-176)||(321472-321530)
[»] chr3 (14 HSPs)
chr3 (112-207)||(45182963-45183059)
chr3 (112-180)||(27935188-27935256)
chr3 (118-206)||(6930989-6931078)
chr3 (112-176)||(11018301-11018365)
chr3 (118-176)||(39771804-39771862)
chr3 (112-206)||(33040936-33041031)
chr3 (118-176)||(6269521-6269579)
chr3 (118-176)||(22968539-22968597)
chr3 (127-176)||(45335889-45335938)
chr3 (120-176)||(6503666-6503722)
chr3 (118-176)||(19390160-19390218)
chr3 (128-176)||(19565606-19565654)
chr3 (133-176)||(40081849-40081892)
chr3 (112-168)||(5135291-5135347)
[»] chr7 (20 HSPs)
chr7 (112-206)||(33685547-33685642)
chr7 (112-176)||(34389145-34389209)
chr7 (112-176)||(35090182-35090246)
chr7 (118-176)||(3114191-3114249)
chr7 (118-176)||(5555501-5555559)
chr7 (126-176)||(14777210-14777260)
chr7 (119-176)||(8867827-8867884)
chr7 (44-98)||(10868496-10868550)
chr7 (118-206)||(7002708-7002797)
chr7 (118-206)||(7048579-7048668)
chr7 (112-206)||(37002233-37002328)
chr7 (118-176)||(8394139-8394197)
chr7 (118-176)||(36630830-36630888)
chr7 (118-172)||(36658199-36658253)
chr7 (118-176)||(43184563-43184621)
chr7 (127-206)||(26624728-26624809)
chr7 (118-171)||(40920098-40920151)
chr7 (113-180)||(26502820-26502887)
chr7 (113-180)||(26589827-26589894)
chr7 (112-167)||(38638325-38638380)
[»] chr5 (17 HSPs)
chr5 (112-206)||(31680350-31680445)
chr5 (112-173)||(31501805-31501866)
chr5 (45-176)||(28801301-28801432)
chr5 (112-176)||(33430335-33430399)
chr5 (112-175)||(17332640-17332703)
chr5 (118-176)||(39434710-39434768)
chr5 (118-175)||(10033942-10033999)
chr5 (112-176)||(12278949-12279013)
chr5 (112-176)||(37254655-37254719)
chr5 (118-176)||(13817991-13818049)
chr5 (118-172)||(16155015-16155069)
chr5 (127-176)||(26283422-26283471)
chr5 (118-171)||(43068896-43068949)
chr5 (118-176)||(36293716-36293774)
chr5 (126-170)||(39657609-39657653)
chr5 (119-176)||(202653-202710)
chr5 (127-176)||(19985953-19986002)
[»] chr4 (26 HSPs)
chr4 (112-206)||(6690324-6690419)
chr4 (112-176)||(3292985-3293049)
chr4 (112-176)||(30216831-30216895)
chr4 (112-176)||(43143673-43143737)
chr4 (118-176)||(20129324-20129382)
chr4 (118-180)||(43355914-43355976)
chr4 (112-176)||(50205166-50205230)
chr4 (118-176)||(26439374-26439432)
chr4 (118-176)||(34407379-34407437)
chr4 (44-176)||(30109970-30110102)
chr4 (112-173)||(44156668-44156729)
chr4 (112-176)||(42333865-42333929)
chr4 (112-176)||(48129980-48130044)
chr4 (118-185)||(17511329-17511396)
chr4 (118-176)||(10352979-10353037)
chr4 (118-176)||(25930722-25930780)
chr4 (126-176)||(47500787-47500837)
chr4 (126-176)||(13012202-13012252)
chr4 (118-168)||(29319800-29319850)
chr4 (112-165)||(6254569-6254622)
chr4 (112-176)||(27363375-27363439)
chr4 (127-206)||(30077735-30077814)
chr4 (112-171)||(48989347-48989406)
chr4 (112-166)||(35545977-35546031)
chr4 (118-176)||(36382440-36382498)
chr4 (112-173)||(45194193-45194254)
[»] scaffold0154 (1 HSPs)
scaffold0154 (112-176)||(31494-31558)
[»] chr2 (18 HSPs)
chr2 (112-206)||(45418566-45418661)
chr2 (118-176)||(41251729-41251787)
chr2 (112-176)||(771013-771077)
chr2 (127-206)||(44084707-44084787)
chr2 (44-166)||(4555232-4555354)
chr2 (112-206)||(8147334-8147429)
chr2 (118-176)||(35962729-35962787)
chr2 (118-176)||(42440000-42440058)
chr2 (112-207)||(8059422-8059518)
chr2 (112-172)||(12756926-12756986)
chr2 (118-176)||(7072647-7072705)
chr2 (127-176)||(6403908-6403957)
chr2 (118-176)||(2958196-2958253)
chr2 (126-176)||(16405614-16405664)
chr2 (127-185)||(18981621-18981679)
chr2 (112-170)||(34905969-34906027)
chr2 (118-176)||(17445136-17445192)
chr2 (126-176)||(32127244-32127294)
[»] chr6 (9 HSPs)
chr6 (112-205)||(24697906-24698000)
chr6 (118-176)||(34948853-34948911)
chr6 (112-176)||(18339120-18339184)
chr6 (112-206)||(28996713-28996808)
chr6 (126-176)||(398631-398681)
chr6 (118-174)||(33229431-33229487)
chr6 (127-173)||(29743300-29743346)
chr6 (126-173)||(31028467-31028514)
chr6 (126-175)||(13837836-13837885)
[»] scaffold0069 (1 HSPs)
scaffold0069 (118-171)||(17861-17914)
[»] scaffold0502 (1 HSPs)
scaffold0502 (112-176)||(5244-5308)
[»] scaffold2142 (1 HSPs)
scaffold2142 (126-176)||(536-586)
[»] scaffold0002 (1 HSPs)
scaffold0002 (126-176)||(480560-480610)
[»] scaffold0041 (1 HSPs)
scaffold0041 (118-171)||(52944-52997)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 208 - 346
Target Start/End: Complemental strand, 6267082 - 6266944
Alignment:
208 attaaataatattatctcttcctttgtttgatacagattatttcattttcaacagtcacattttgcacatggtgagtactagggaatatctcagttctaa 307  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
6267082 attaaataatattatctctttctttgtttgatacagactatttcattttcaacattcacattttgcacatggtaagtacttgggaatatctcagttctaa 6266983  T
308 gctcatgatttgttattaaaaacaaaattgtaacactac 346  Q
    |||||||||||||||||||||||||||||||||||||||    
6266982 gctcatgatttgttattaaaaacaaaattgtaacactac 6266944  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 3435415 - 3435285
Alignment:
44 gtaaatgtctttttcaagcctatttgcgtgtgagaattttcaaattttgcccaaannnnnnnnnnnnnaagtgagttaataggcttttgggttgggtcta 143  Q
    ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||             ||||| |||||| || ||||||||||||||||    
3435415 gtaaatgtcttttccaagcctatttgcgtttgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtcta 3435316  T
144 atgtgtaaaaattatcgatcgagcccgggcg 174  Q
    ||||| |||||||||||||| ||||||||||    
3435315 atgtgcaaaaattatcgatcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 3648889 - 3648949
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg 178  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
3648889 gttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgactg 3648949  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 16788114 - 16788178
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
16788114 aagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 16788178  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 23402186 - 23402091
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||||| | ||||||| | | ||||||| ||||||||    
23402186 aagtgtgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 23402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 4404080 - 4404022
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
4404080 gttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 4404022  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 34136914 - 34136978
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||||    
34136914 aagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 34136978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 2729285 - 2729380
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||| | | ||||||| | | ||||||| ||||||||    
2729285 aagtgtgttaatgggcttttggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgccc 2729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 36408623 - 36408565
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||    
36408623 gttaatggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgac 36408565  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 39914579 - 39914529
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||||||||    
39914579 gctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 39914529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 29728489 - 29728539
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||||||||| |||||||||| |||| ||||||||||||| ||||||||    
29728489 gcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgac 29728539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 9877298 - 9877242
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcc 168  Q
    ||||| |||||| | |||||||||| ||||||||||| |||||||||| ||||||||    
9877298 aagtgtgttaattgacttttgggttaggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 40470582 - 40470637
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagc 167  Q
    ||||| |||||| | ||||||  |||||||||||||| ||||||||||||||||||    
40470582 aagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 10397135 - 10397197
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgcc 180  Q
    |||||| |||||||||||||   |||||||| | ||||||||||| |||||||||||| ||||    
10397135 gttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcc 10397197  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 41972296 - 41972458
Alignment:
44 gtaaatgtctttttcaagcctatttgcgtgtgagaattttcaaattttgcccaaannnnnnnnnnnnnaagtgagttaataggcttttgggttgggtcta 143  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||  |||||             ||||| |||||||||||||| |||||| ||||    
41972296 gtaaatgtcttttccaagcctatttgcgtgtgagaattttcagattttttccaaatttttctttttgtaagtgtgttaataggcttttaggttggatcta 41972395  T
144 atgtgtaaaaattatcgatcgagcccgggcgactgccggggttggctgg-cggtggaaccgccc 206  Q
    ||||| ||||||||||||||||| || |||||| ||| ||| | ||||| ||||||||||||||    
41972396 atgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgctggacggtggaaccgccc 41972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 35907622 - 35907566
Alignment:
120 taataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||    
35907622 taattggcttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgac 35907566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 33489833 - 33489779
Alignment:
44 gtaaatgtctttttcaagcctatttgcgtgtgagaattttcaaattttgcccaaa 98  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||    
33489833 gtaaatgtcttttccaagcctatttgcgtgtgagaattttcagattttgctcaaa 33489779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 42311043 - 42311093
Alignment:
125 ggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcga 175  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
42311043 ggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 42311093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 7433517 - 7433459
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| ||||||||| |||||||| ||||||||    
7433517 gttaatgggcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgac 7433459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 26144319 - 26144269
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||||||||    
26144319 gctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 26144269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 32982151 - 32982209
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||| |||||||||||||||| ||||||||||||||| ||||| |||||    
32982151 gttaatgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgac 32982209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 3829047 - 3828998
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||||||||||| ||||||| |||||||||||||||| |||| |||||    
3829047 cttttgggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgac 3828998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 48901207 - 48901288
Alignment:
125 ggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgccggggttggctggcggtggaaccgccc 206  Q
    ||||||||||||||| |||||||| | |||||||||||||| ||||| |  |  |||| |||| | ||||||||||||||||    
48901207 ggcttttgggttgggcctaatgtgcataaattatcgatcgaccccggccaccgcccggagttgccgggcggtggaaccgccc 48901288  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 17445391 - 17445327
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| | |||||||||||| ||||||||  ||||||||| |||| ||||||||||||    
17445391 aagtgtgttaattgacttttgggttggatctaatgtacaaaaattattgatccagcccgggcgac 17445327  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 321472 - 321530
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| | |||||||||||| |||||||   |||||||||||||||||||||| ||||    
321472 gttaatggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgac 321530  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 45183059 - 45182963
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccct 207  Q
    ||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||| | | ||||||| |||||||||    
45183059 aagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccct 45182963  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 27935256 - 27935188
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgcc 180  Q
    ||||| ||||||  ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
27935256 aagtgtgttaatgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcc 27935188  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 6930989 - 6931078
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    |||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||||| | ||||||| | | ||||||| ||||||||    
6930989 gttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 6931078  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 11018301 - 11018365
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||    
11018301 aagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgac 11018365  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 39771862 - 39771804
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| |||||||||||| ||||||||||||||    
39771862 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgac 39771804  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 33041031 - 33040936
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||| ||||||  |||||||||||||||||||| || |||||||||| |||||||||| ||||| | ||||||| | | ||||||| ||||||||    
33041031 aagtgtgttaattagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgccc 33040936  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 6269521 - 6269579
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||| |||| ||||    
6269521 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgac 6269579  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 22968539 - 22968597
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||  |||||||||| |||||||||||||||||||||| ||||    
22968539 gttaatgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgac 22968597  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 45335938 - 45335889
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||||||    
45335938 ctttttggttgggtctaatgtgtaaaaattatcgattgagtccgggcgac 45335889  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 6503666 - 6503722
Alignment:
120 taataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||| ||||||||||||| ||||||| || |||||| ||||||||||||||||||||    
6503666 taattggcttttgggttgagtctaatttgcaaaaataatcgatcgagcccgggcgac 6503722  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 19390218 - 19390160
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||||| ||||| ||||| |||||||||| |||||||||||||||| ||||| ||||    
19390218 gttaatagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgac 19390160  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 19565606 - 19565654
Alignment:
128 ttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||| |||||||||||||||| ||||||||||||| || ||||||||||    
19565606 tttttggttgggtctaatgtgcaaaaattatcgattgaacccgggcgac 19565654  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 40081849 - 40081892
Alignment:
133 ggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||||||  |||||||||||||||||||||||||||    
40081849 ggttgagtctaatgttcaaaaattatcgatcgagcccgggcgac 40081892  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 5135347 - 5135291
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcc 168  Q
    ||||| ||||||  |||||| |||||||||||||||  |||||| ||||||||||||    
5135347 aagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgagcc 5135291  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 33685642 - 33685547
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgcc-ggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||| |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||| | | ||||||| ||||||||    
33685642 aagtgtgttaatgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgccc 33685547  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 34389145 - 34389209
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| ||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
34389145 aagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgac 34389209  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 35090246 - 35090182
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||    
35090246 aagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgac 35090182  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 3114191 - 3114249
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
3114191 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 3114249  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 5555559 - 5555501
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
5555559 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 5555501  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 14777210 - 14777260
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||    
14777210 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 14777260  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 8867827 - 8867884
Alignment:
119 ttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||||    
8867827 ttaattggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgac 8867884  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 10868496 - 10868550
Alignment:
44 gtaaatgtctttttcaagcctatttgcgtgtgagaattttcaaattttgcccaaa 98  Q
    ||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||    
10868496 gtaaatgtcttttccgagcctatttgcgcgtgagaattttcagattttgcccaaa 10868550  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 7002797 - 7002708
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgc-cggggttggctggcggtggaaccgccc 206  Q
    |||||| |||||||||||||||| ||||||  ||||||  ||||||||||||||||||| || |||||| | | ||||||| ||||||||    
7002797 gttaattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7002708  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 7048668 - 7048579
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgc-cggggttggctggcggtggaaccgccc 206  Q
    |||||| |||||||||||||||| ||||||  ||||||  ||||||||||||||||||| || |||||| | | ||||||| ||||||||    
7048668 gttaattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7048579  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 37002233 - 37002328
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||| | ||||||| |||||||||||||| ||||||||||||||||| |||  |||| | ||||||| | | ||||||| ||||||||    
37002233 aagtgtgttaattgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgccc 37002328  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 8394197 - 8394139
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| | ||||| ||||| || ||||||| |||||||||||||||||||||||||||    
8394197 gttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgac 8394139  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 36630888 - 36630830
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| | ||||| ||||| || ||||||| |||||||||||||||||||||||||||    
36630888 gttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgac 36630830  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 36658253 - 36658199
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccggg 172  Q
    |||||| ||||||| ||||||||| |||||| ||||||||||||||||| |||||    
36658253 gttaattggcttttcggttgggtccaatgtgcaaaaattatcgatcgagtccggg 36658199  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 43184563 - 43184621
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||  |||| ||| ||||||||||||||||||||||| |||||    
43184563 gttaattggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgac 43184621  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 26624809 - 26624728
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcg-atcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||||| ||||||||||| || ||||||||||| ||||||||| |||||| | ||||||||| | ||||||| ||||||||    
26624809 cttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgccc 26624728  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 40920098 - 40920151
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgg 171  Q
    |||||| ||||||||||||   ||||||||| ||||||||||||||||||||||    
40920098 gttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 40920151  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 26502887 - 26502820
Alignment:
113 agtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgcc 180  Q
    |||| |||||| |||||||||||||||  |||| || |||||   |||||||||||||||||||||||    
26502887 agtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcc 26502820  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 26589827 - 26589894
Alignment:
113 agtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgcc 180  Q
    |||| |||||| |||||||||||||||  |||| || |||||   |||||||||||||||||||||||    
26589827 agtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcc 26589894  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 38638325 - 38638380
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagc 167  Q
    ||||| |||||| | |||||||||||| ||||||||| |||||||||| |||||||    
38638325 aagtgtgttaattgacttttgggttggatctaatgtgcaaaaattatcaatcgagc 38638380  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 31680445 - 31680350
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||| | | ||||||| ||||||||    
31680445 aagtgtgttaattggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31680350  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 31501805 - 31501866
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggc 173  Q
    ||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
31501805 aagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggc 31501866  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 28801432 - 28801301
Alignment:
45 taaatgtctttttcaagcctatttgcgtgtgagaattttcaaattttgcccaaannnnnnnnnnnnnaagtgagttaataggcttttgggttgggtctaa 144  Q
    ||||||||||||   |||||||||||||||||||||||||| ||||| ||||||             ||||| |||||| ||||||||| |||| |||||    
28801432 taaatgtcttttctgagcctatttgcgtgtgagaattttcatatttttcccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaa 28801333  T
145 tgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||| ||||||||||||||||||| |||||||    
28801332 tgtgcaaaaattatcgatcgagccagggcgac 28801301  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 33430399 - 33430335
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||    
33430399 aagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 17332640 - 17332703
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcga 175  Q
    ||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||    
17332640 aagtgtgttaattggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcga 17332703  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 39434768 - 39434710
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
39434768 gttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgac 39434710  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 10033999 - 10033942
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcga 175  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
10033999 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 10033942  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 12278949 - 12279013
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||    
12278949 aagtgtgttaattggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgac 12279013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 37254719 - 37254655
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||| |||||||    
37254719 aagtgtgttaattgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgac 37254655  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 13818049 - 13817991
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||||    
13818049 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgac 13817991  T

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Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 16155069 - 16155015
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccggg 172  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||    
16155069 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 26283422 - 26283471
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||||||    
26283422 ctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 26283471  T

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Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 43068949 - 43068896
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgg 171  Q
    |||||| | |||||||||||||||||||||| ||||||||| ||||||||||||    
43068949 gttaatggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccgg 43068896  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 36293716 - 36293774
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||  ||||||||||||||||| |||| ||||    
36293716 gttaatgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgac 36293774  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 39657609 - 39657653
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccg 170  Q
    |||||||||||| |||||||||| |||||||||| ||||||||||    
39657609 gcttttgggttgagtctaatgtgcaaaaattatcaatcgagcccg 39657653  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 202710 - 202653
Alignment:
119 ttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||||||||| |  |||||||  | |||||||||||||||||||||||||    
202710 ttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgac 202653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 19986002 - 19985953
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||||||||  ||||||||| |||||||||||||||||| ||| ||||    
19986002 cttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgac 19985953  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 6690324 - 6690419
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||| | | ||||||| ||||||||    
6690324 aagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 6690419  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 3292985 - 3293049
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||    
3292985 aagtgtgttaattggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgac 3293049  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 30216831 - 30216895
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| ||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
30216831 aagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgac 30216895  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 43143673 - 43143737
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
43143673 aagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 43143737  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 20129382 - 20129324
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
20129382 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 20129324  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 43355976 - 43355914
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgcc 180  Q
    |||||| ||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||    
43355976 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcc 43355914  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 50205166 - 50205230
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
50205166 aagtgtgttaattggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgac 50205230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 26439374 - 26439432
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| |||||||||||| ||||||||||||||    
26439374 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgac 26439432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 34407379 - 34407437
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| |||||||||||| ||||||||||||||    
34407379 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgac 34407437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 30110102 - 30109970
Alignment:
44 gtaaatgtctttttcaagcctatttgcgtgtgagaattttcaaattttgcccaaannnnnnnnnnnnnaagtgagttaataggcttttgggttgggtcta 143  Q
    |||||||| |||| | ||||||||||||||||||| |||||| |||||| |||||             ||||| |||||| | |||| || |||||||||    
30110102 gtaaatgtattttccgagcctatttgcgtgtgagatttttcatattttgtccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtcta 30110003  T
144 atgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| ||||||||||||||||| |||||||||    
30110002 atgtgcaaaaattatcgatcgagtccgggcgac 30109970  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 44156729 - 44156668
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggc 173  Q
    ||||| |||||| |||||||||||||||||||||||| ||||||||||| | ||||||||||    
44156729 aagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 42333865 - 42333929
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||||||||||||| |||||||||| ||||||||||||| |||||||| ||||    
42333865 aagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgattgagcccggacgac 42333929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 48130044 - 48129980
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| ||||||  |||||||||||||||||||| || |||||||||||||||||||||| ||||    
48130044 aagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgac 48129980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 17511329 - 17511396
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgccggggt 185  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||| | ||||||| ||| ||||    
17511329 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccgccagggt 17511396  T

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Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 10352979 - 10353037
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| | ||||| |||||||||||||||| ||||||||||||| |||||||||||||    
10352979 gttaatggactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcgac 10353037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 25930780 - 25930722
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| || ||||||| ||||||||| |||||||||||||||||    
25930780 gttaatgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgac 25930722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 47500837 - 47500787
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||||||||    
47500837 gctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 47500787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 13012252 - 13012202
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| |||||  ||||||||| |||||||||||||||||||||||||||    
13012252 gctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgac 13012202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 29319800 - 29319850
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcc 168  Q
    |||||| || |||||||||| |||||||||| |||||||||||||||||||    
29319800 gttaatgggattttgggttgagtctaatgtgcaaaaattatcgatcgagcc 29319850  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 6254622 - 6254569
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcga 165  Q
    ||||| |||||| | |||||||||||||| ||||||| ||||||||||||||||    
6254622 aagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 27363439 - 27363375
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||||||||||||||| ||||| || |||||   |||||||||||||||||||    
27363439 aagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgac 27363375  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 30077735 - 30077814
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgccggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||||||||||||| |||| |||||||| ||||| ||||||| ||| | | | || ||||||| ||||||||    
30077735 ctttttggttgggtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcgcgggcggtgaaaccgccc 30077814  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 48989406 - 48989347
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgg 171  Q
    ||||| |||||| | |||||| ||||||| ||||||| |||||||||||||||| |||||    
48989406 aagtgtgttaatggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccgg 48989347  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 35546031 - 35545977
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgag 166  Q
    ||||| |||||| |||||||||||||||||| ||| | ||||||| |||||||||    
35546031 aagtgtgttaattggcttttgggttgggtctgatgcgcaaaaattgtcgatcgag 35545977  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 36382440 - 36382498
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| | ||||| ||||| || ||||||| ||||||||| |||||||||||||||||    
36382440 gttaatggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgac 36382498  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 45194254 - 45194193
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggc 173  Q
    ||||| |||||| | ||||||||||| || ||||||| ||||||||| ||||||| ||||||    
45194254 aagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggc 45194193  T

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Target: scaffold0154 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 31558 - 31494
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||    
31558 aagtgtgttaatgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgac 31494  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 45418661 - 45418566
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||||| | ||||||| | | ||||||| ||||||||    
45418661 aagtgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45418566  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 41251729 - 41251787
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
41251729 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 41251787  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 771077 - 771013
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
771077 aagtgtgttaatgggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgac 771013  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 44084707 - 44084787
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||| | | ||||||| ||||||||    
44084707 cttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgccc 44084787  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 4555232 - 4555354
Alignment:
44 gtaaatgtctttttcaagcctatttgcgtgtgagaattttcaaattttgcccaaannnnnnnnnnnnnaagtgagttaataggcttttgggttgggtcta 143  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||             ||||| |||||   ||||||||||||||| |     
4555232 gtaaatgtctttttcgagcctatttacgtgtgagaattttcagattttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttg 4555331  T
144 atgtgtaaaaattatcgatcgag 166  Q
    ||||| |||||||||||||||||    
4555332 atgtgcaaaaattatcgatcgag 4555354  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 8147429 - 8147334
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||| | |||||| ||||||||||||||| ||| ||||||||||||||||||||||| | ||||||| | | ||||||| ||||||||    
8147429 aagtgtgttaattgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 8147334  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 35962787 - 35962729
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||    
35962787 gttaataagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgac 35962729  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 42440058 - 42440000
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||  |||||||||| |||||||||||||||||||||||||||    
42440058 gttaatgggcttttgggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgac 42440000  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 8059422 - 8059518
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcga-ctgccggggttggctggcggtggaaccgccct 207  Q
    ||||| |||||| |||||||||||||  ||||||||| ||||||||||||| ||||| |||||| | |||||||| | | ||||||| |||||||||    
8059422 aagtgtgttaattggcttttgggttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgccct 8059518  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 12756926 - 12756986
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccggg 172  Q
    ||||| |||||| |||||||||||||||||||||| | |||||||||||||||| ||||||    
12756926 aagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgaacccggg 12756986  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 7072647 - 7072705
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| || ||||||  |||||||||||||||||||||||||||    
7072647 gttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgac 7072705  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 6403908 - 6403957
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||||||    
6403908 ctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 6403957  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 2958196 - 2958253
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| ||||||||||  ||||||||||||||||||||| ||||    
2958196 gttaatgggcttttgggttgagtctaatgtg-caaaattatcgatcgagcccggacgac 2958253  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 16405664 - 16405614
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||||||||| |||||| ||| ||||||||||||| |||||||||||||    
16405664 gcttttgggttgagtctaacgtgcaaaaattatcgattgagcccgggcgac 16405614  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 18981679 - 18981621
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactgccggggt 185  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||| |||| ||| ||||    
18981679 cttttgggttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgcccgggt 18981621  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 34906027 - 34905969
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccg 170  Q
    ||||| |||||| |||||||||||| ||  ||||||| |||||||||||||||||||||    
34906027 aagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 17445136 - 17445192
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||  ||| |||||||||||||||||| ||||||||    
17445136 gttaatgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgac 17445192  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 32127244 - 32127294
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||||||| | || ||||||| ||||||||| |||||||||||||||||    
32127244 gcttttgggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgac 32127294  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 24697906 - 24698000
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgcc 205  Q
    ||||| |||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||| || ||||||| | | ||||||| |||||||    
24697906 aagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccgcc 24698000  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 34948853 - 34948911
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||    
34948853 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgac 34948911  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 18339184 - 18339120
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||||||| | |||||||||||||| ||||||||| |||||||||||||||||    
18339184 aagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgac 18339120  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 28996808 - 28996713
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgactg-ccggggttggctggcggtggaaccgccc 206  Q
    ||||| |||||| | ||||| |||||||||||||| | |||||||||||||||||| |||||||| | ||||||| | | ||||||| ||||||||    
28996808 aagtgtgttaattgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgccc 28996713  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 398681 - 398631
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||||||||    
398681 gctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 398631  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 33229431 - 33229487
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcg 174  Q
    |||||| | |||||||||||||||||||||  |||||| ||||||||||||||||||    
33229431 gttaatggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 29743346 - 29743300
Alignment:
127 cttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggc 173  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||||    
29743346 ctttttggttgggtctaatgtgcaaaaattatcgattgagcccgggc 29743300  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 31028467 - 31028514
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggc 173  Q
    |||||| |||||| ||||||||| ||||||||||||||||| ||||||    
31028467 gcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggc 31028514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 13837885 - 13837836
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcga 175  Q
    |||||||||||| |||||||||  |||||||||||||||| |||| ||||    
13837885 gcttttgggttgagtctaatgtacaaaaattatcgatcgaacccgagcga 13837836  T

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Target: scaffold0069 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 17914 - 17861
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgg 171  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||||||    
17914 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 17861  T

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Target: scaffold0502 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 5308 - 5244
Alignment:
112 aagtgagttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    ||||| |||||| ||||||| | |||||||||||||| ||||||||| |||||||||||||||||    
5308 aagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgac 5244  T

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Target: scaffold2142 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 586 - 536
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||||||||    
586 gctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 536  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 480560 - 480610
Alignment:
126 gcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgggcgac 176  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||||||||    
480560 gctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 480610  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 52997 - 52944
Alignment:
118 gttaataggcttttgggttgggtctaatgtgtaaaaattatcgatcgagcccgg 171  Q
    |||||| ||||||||||||   ||||||||| ||||||||||||||||||||||    
52997 gttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 52944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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